miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 56818 0.72 0.173049
Target:  5'- aCGCCGCcuguGCCUGGGGGaGCUggggagGCCGGg -3'
miRNA:   3'- -GUGGCGc---CGGACCCCCgCGAa-----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 99512 0.73 0.164763
Target:  5'- uCugCG-GGCgCUGGGGGCGCggGCCu- -3'
miRNA:   3'- -GugGCgCCG-GACCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 77994 0.73 0.164763
Target:  5'- cCGCCGCGGCggaggcggccCUGGGGGCGCcccgcgGCgGGa -3'
miRNA:   3'- -GUGGCGCCG----------GACCCCCGCGaa----CGgUU- -5'
23569 3' -64.7 NC_005261.1 + 103502 0.73 0.164763
Target:  5'- -cCCGCGGCCgccaGGGGGCGCcgaccGCUGAg -3'
miRNA:   3'- guGGCGCCGGa---CCCCCGCGaa---CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 50638 0.73 0.168447
Target:  5'- uCGCCGgcaccaagaccacCGGCCUGGGcGGCGCggggcugacgGCCAAg -3'
miRNA:   3'- -GUGGC-------------GCCGGACCC-CCGCGaa--------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 79083 0.73 0.168861
Target:  5'- gCGCCGCGcGCCcGGGGcGCGCcgGCCu- -3'
miRNA:   3'- -GUGGCGC-CGGaCCCC-CGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 46756 0.72 0.172626
Target:  5'- gGCCGCGGCggcgccgCUGGGaGGCGCgggcgggGCCGu -3'
miRNA:   3'- gUGGCGCCG-------GACCC-CCGCGaa-----CGGUu -5'
23569 3' -64.7 NC_005261.1 + 70946 0.72 0.173049
Target:  5'- gCGCgGCGGCggGGGGGCuGCUgcugGCCGGg -3'
miRNA:   3'- -GUGgCGCCGgaCCCCCG-CGAa---CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 38988 0.72 0.173049
Target:  5'- --aCGCGGCCcGGcGGGCGCgacGCCGAc -3'
miRNA:   3'- gugGCGCCGGaCC-CCCGCGaa-CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 105918 0.73 0.163149
Target:  5'- gCGCCGCGGCCgcggcggcggcggGGGcGGCGCccGCCu- -3'
miRNA:   3'- -GUGGCGCCGGa------------CCC-CCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 33322 0.73 0.160755
Target:  5'- uCACCGCGGcCCUGGaGGGCGUccggGCgCAc -3'
miRNA:   3'- -GUGGCGCC-GGACC-CCCGCGaa--CG-GUu -5'
23569 3' -64.7 NC_005261.1 + 56751 0.74 0.135084
Target:  5'- aGCCGCGGCCcugcucUGGGcGGCGUggGCCc- -3'
miRNA:   3'- gUGGCGCCGG------ACCC-CCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 49889 0.8 0.053517
Target:  5'- aCGCCGCGGCg-GGGGGCGCc-GCCAGc -3'
miRNA:   3'- -GUGGCGCCGgaCCCCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 64761 0.79 0.055955
Target:  5'- gCGCCGCGGCCcaggGGGGGCGCgcggacgcggacgcgGCCGg -3'
miRNA:   3'- -GUGGCGCCGGa---CCCCCGCGaa-------------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 60136 0.79 0.059424
Target:  5'- gGCCGgGGCCUGGGccGGCGCggggGCCAGc -3'
miRNA:   3'- gUGGCgCCGGACCC--CCGCGaa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 34460 0.78 0.06596
Target:  5'- -cUCGCGGCCUGGGuGGCGCUgcUGCaCGAg -3'
miRNA:   3'- guGGCGCCGGACCC-CCGCGA--ACG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 37525 0.76 0.097178
Target:  5'- gGCCGCGGCUcGGGcGGCGCgcGCCGc -3'
miRNA:   3'- gUGGCGCCGGaCCC-CCGCGaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 102314 0.75 0.116139
Target:  5'- gGCUGCGGCgCUGGGGccGCGC-UGCCGc -3'
miRNA:   3'- gUGGCGCCG-GACCCC--CGCGaACGGUu -5'
23569 3' -64.7 NC_005261.1 + 31128 0.75 0.118814
Target:  5'- uGgCGCGG-CUGGGGGCGCUguucgacUGCCAc -3'
miRNA:   3'- gUgGCGCCgGACCCCCGCGA-------ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 84863 0.75 0.122161
Target:  5'- aCACCGCGGCCgGGGcGGCG---GCCGAa -3'
miRNA:   3'- -GUGGCGCCGGaCCC-CCGCgaaCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.