miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 122380 1.05 0.000644
Target:  5'- cCACCGCGGCCUGGGGGCGCUUGCCAAg -3'
miRNA:   3'- -GUGGCGCCGGACCCCCGCGAACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 133275 0.83 0.028395
Target:  5'- aCGCCGCGGCC-GGGGGCGCcuggGCCGc -3'
miRNA:   3'- -GUGGCGCCGGaCCCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 28758 0.83 0.028395
Target:  5'- aCGCCGCGGCC-GGGGGCGCcuggGCCGc -3'
miRNA:   3'- -GUGGCGCCGGaCCCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 49889 0.8 0.053517
Target:  5'- aCGCCGCGGCg-GGGGGCGCc-GCCAGc -3'
miRNA:   3'- -GUGGCGCCGgaCCCCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 64761 0.79 0.055955
Target:  5'- gCGCCGCGGCCcaggGGGGGCGCgcggacgcggacgcgGCCGg -3'
miRNA:   3'- -GUGGCGCCGGa---CCCCCGCGaa-------------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 60136 0.79 0.059424
Target:  5'- gGCCGgGGCCUGGGccGGCGCggggGCCAGc -3'
miRNA:   3'- gUGGCgCCGGACCC--CCGCGaa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 34460 0.78 0.06596
Target:  5'- -cUCGCGGCCUGGGuGGCGCUgcUGCaCGAg -3'
miRNA:   3'- guGGCGCCGGACCC-CCGCGA--ACG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 14362 0.78 0.069483
Target:  5'- aGCCGCGGCCgGGGcGGCGCggugGCCc- -3'
miRNA:   3'- gUGGCGCCGGaCCC-CCGCGaa--CGGuu -5'
23569 3' -64.7 NC_005261.1 + 56128 0.77 0.085468
Target:  5'- gCGCCGCaGGgCgGGGGGCGCggGCCGAg -3'
miRNA:   3'- -GUGGCG-CCgGaCCCCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 107690 0.77 0.087697
Target:  5'- cCGCCGCGGC--GGGGGCGCc-GCCGAa -3'
miRNA:   3'- -GUGGCGCCGgaCCCCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 37525 0.76 0.097178
Target:  5'- gGCCGCGGCUcGGGcGGCGCgcGCCGc -3'
miRNA:   3'- gUGGCGCCGGaCCC-CCGCGaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 121784 0.76 0.101236
Target:  5'- gGCCGCGGCCggcgggcugggcaGGGGGCGCgugGCUGGg -3'
miRNA:   3'- gUGGCGCCGGa------------CCCCCGCGaa-CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 102314 0.75 0.116139
Target:  5'- gGCUGCGGCgCUGGGGccGCGC-UGCCGc -3'
miRNA:   3'- gUGGCGCCG-GACCCC--CGCGaACGGUu -5'
23569 3' -64.7 NC_005261.1 + 31128 0.75 0.118814
Target:  5'- uGgCGCGG-CUGGGGGCGCUguucgacUGCCAc -3'
miRNA:   3'- gUgGCGCCgGACCCCCGCGA-------ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 84863 0.75 0.122161
Target:  5'- aCACCGCGGCCgGGGcGGCG---GCCGAa -3'
miRNA:   3'- -GUGGCGCCGGaCCC-CCGCgaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 98299 0.74 0.128472
Target:  5'- -uCCGCGGCCUcGGGGGCGggcGCCGc -3'
miRNA:   3'- guGGCGCCGGA-CCCCCGCgaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 97405 0.74 0.135084
Target:  5'- uGCCGCgGGCUUGGcGGGCGCgccggGCCu- -3'
miRNA:   3'- gUGGCG-CCGGACC-CCCGCGaa---CGGuu -5'
23569 3' -64.7 NC_005261.1 + 56751 0.74 0.135084
Target:  5'- aGCCGCGGCCcugcucUGGGcGGCGUggGCCc- -3'
miRNA:   3'- gUGGCGCCGG------ACCC-CCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 33824 0.74 0.142007
Target:  5'- ---gGCGGCCgGGGGGCGCggGCCc- -3'
miRNA:   3'- guggCGCCGGaCCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 100064 0.73 0.156835
Target:  5'- cCGCCGCcGCCcGGGGGCGC--GCCGc -3'
miRNA:   3'- -GUGGCGcCGGaCCCCCGCGaaCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.