Results 1 - 20 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 452 | 0.67 | 0.370229 |
Target: 5'- gCGgCGgGGCCcGGGGGCGC--GCCc- -3' miRNA: 3'- -GUgGCgCCGGaCCCCCGCGaaCGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 1180 | 0.7 | 0.234756 |
Target: 5'- gCGCCGCGGCCgGGGccggggccgggcgcGGCGCggaccccccGCCGAu -3' miRNA: 3'- -GUGGCGCCGGaCCC--------------CCGCGaa-------CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 1401 | 0.73 | 0.163149 |
Target: 5'- gCGCCGCGGCCgcggcggcggcggGGGcGGCGCccGCCu- -3' miRNA: 3'- -GUGGCGCCGGa------------CCC-CCGCGaaCGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 1500 | 0.66 | 0.436538 |
Target: 5'- cCGCCGCGGCC-GGcagcucgucGGGCGCcaGCUc- -3' miRNA: 3'- -GUGGCGCCGGaCC---------CCCGCGaaCGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 1734 | 0.67 | 0.39428 |
Target: 5'- gCACCGCGGUgcgcGGGcccaGGCGCgugGCCAc -3' miRNA: 3'- -GUGGCGCCGga--CCC----CCGCGaa-CGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 2549 | 0.67 | 0.386151 |
Target: 5'- gCGCCGCGGCgCUGGgcgcGGGCGUgUGgUAc -3' miRNA: 3'- -GUGGCGCCG-GACC----CCCGCGaACgGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 2876 | 0.71 | 0.228751 |
Target: 5'- aCGCgGCGGCCcucGGGGGCGaaccgcuccggGCCAAa -3' miRNA: 3'- -GUGgCGCCGGa--CCCCCGCgaa--------CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 3213 | 0.66 | 0.454157 |
Target: 5'- cCGCCGCGGCCgcgUGcGGGCccGCcgcGCCAGg -3' miRNA: 3'- -GUGGCGCCGG---ACcCCCG--CGaa-CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 4390 | 0.69 | 0.311142 |
Target: 5'- gCGCaCGCGGCCgggcgGcGGcGGCGCgcUGCCGGg -3' miRNA: 3'- -GUG-GCGCCGGa----C-CC-CCGCGa-ACGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 5487 | 0.66 | 0.46311 |
Target: 5'- --gCGCGcGCCgGGGGGUaGCUgggGCCGc -3' miRNA: 3'- gugGCGC-CGGaCCCCCG-CGAa--CGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 6793 | 0.67 | 0.378134 |
Target: 5'- aGgCGCGGCgCaagGGGGGCGCcggcGCCGc -3' miRNA: 3'- gUgGCGCCG-Ga--CCCCCGCGaa--CGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 8807 | 0.7 | 0.271722 |
Target: 5'- cCGCCGagGGCUUGaaGGGGCGCccGCCGGg -3' miRNA: 3'- -GUGGCg-CCGGAC--CCCCGCGaaCGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 9123 | 0.69 | 0.311142 |
Target: 5'- gGCCGcCGGgaCUGGGGGCGggUGCa-- -3' miRNA: 3'- gUGGC-GCCg-GACCCCCGCgaACGguu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 10019 | 0.66 | 0.427877 |
Target: 5'- gACCGggcgGGCCUcgcgucGGGGGCGCUcGCUc- -3' miRNA: 3'- gUGGCg---CCGGA------CCCCCGCGAaCGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 12640 | 0.68 | 0.354762 |
Target: 5'- cCGgCGCGGUCUGGGGccGCGCcgGCgCGAc -3' miRNA: 3'- -GUgGCGCCGGACCCC--CGCGaaCG-GUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 13666 | 0.7 | 0.265555 |
Target: 5'- cCGCCGCGGg--GGGGGCGCgggGCg-- -3' miRNA: 3'- -GUGGCGCCggaCCCCCGCGaa-CGguu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 14362 | 0.78 | 0.069483 |
Target: 5'- aGCCGCGGCCgGGGcGGCGCggugGCCc- -3' miRNA: 3'- gUGGCGCCGGaCCC-CCGCGaa--CGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 14694 | 0.66 | 0.427877 |
Target: 5'- gAUgGUGGCgaggGGGGGCGCcuucgGCCGAg -3' miRNA: 3'- gUGgCGCCGga--CCCCCGCGaa---CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 15864 | 0.67 | 0.410865 |
Target: 5'- gGCCGCGGU--GGGGccGCGCgaGCCGc -3' miRNA: 3'- gUGGCGCCGgaCCCC--CGCGaaCGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 17137 | 0.71 | 0.205037 |
Target: 5'- -cCCGCacGGCCUGGaGGCGCUggcgGCCGc -3' miRNA: 3'- guGGCG--CCGGACCcCCGCGAa---CGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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