miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 452 0.67 0.370229
Target:  5'- gCGgCGgGGCCcGGGGGCGC--GCCc- -3'
miRNA:   3'- -GUgGCgCCGGaCCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 1180 0.7 0.234756
Target:  5'- gCGCCGCGGCCgGGGccggggccgggcgcGGCGCggaccccccGCCGAu -3'
miRNA:   3'- -GUGGCGCCGGaCCC--------------CCGCGaa-------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 1401 0.73 0.163149
Target:  5'- gCGCCGCGGCCgcggcggcggcggGGGcGGCGCccGCCu- -3'
miRNA:   3'- -GUGGCGCCGGa------------CCC-CCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 1500 0.66 0.436538
Target:  5'- cCGCCGCGGCC-GGcagcucgucGGGCGCcaGCUc- -3'
miRNA:   3'- -GUGGCGCCGGaCC---------CCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 1734 0.67 0.39428
Target:  5'- gCACCGCGGUgcgcGGGcccaGGCGCgugGCCAc -3'
miRNA:   3'- -GUGGCGCCGga--CCC----CCGCGaa-CGGUu -5'
23569 3' -64.7 NC_005261.1 + 2549 0.67 0.386151
Target:  5'- gCGCCGCGGCgCUGGgcgcGGGCGUgUGgUAc -3'
miRNA:   3'- -GUGGCGCCG-GACC----CCCGCGaACgGUu -5'
23569 3' -64.7 NC_005261.1 + 2876 0.71 0.228751
Target:  5'- aCGCgGCGGCCcucGGGGGCGaaccgcuccggGCCAAa -3'
miRNA:   3'- -GUGgCGCCGGa--CCCCCGCgaa--------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 3213 0.66 0.454157
Target:  5'- cCGCCGCGGCCgcgUGcGGGCccGCcgcGCCAGg -3'
miRNA:   3'- -GUGGCGCCGG---ACcCCCG--CGaa-CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 4390 0.69 0.311142
Target:  5'- gCGCaCGCGGCCgggcgGcGGcGGCGCgcUGCCGGg -3'
miRNA:   3'- -GUG-GCGCCGGa----C-CC-CCGCGa-ACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 5487 0.66 0.46311
Target:  5'- --gCGCGcGCCgGGGGGUaGCUgggGCCGc -3'
miRNA:   3'- gugGCGC-CGGaCCCCCG-CGAa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 6793 0.67 0.378134
Target:  5'- aGgCGCGGCgCaagGGGGGCGCcggcGCCGc -3'
miRNA:   3'- gUgGCGCCG-Ga--CCCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 8807 0.7 0.271722
Target:  5'- cCGCCGagGGCUUGaaGGGGCGCccGCCGGg -3'
miRNA:   3'- -GUGGCg-CCGGAC--CCCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 9123 0.69 0.311142
Target:  5'- gGCCGcCGGgaCUGGGGGCGggUGCa-- -3'
miRNA:   3'- gUGGC-GCCg-GACCCCCGCgaACGguu -5'
23569 3' -64.7 NC_005261.1 + 10019 0.66 0.427877
Target:  5'- gACCGggcgGGCCUcgcgucGGGGGCGCUcGCUc- -3'
miRNA:   3'- gUGGCg---CCGGA------CCCCCGCGAaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 12640 0.68 0.354762
Target:  5'- cCGgCGCGGUCUGGGGccGCGCcgGCgCGAc -3'
miRNA:   3'- -GUgGCGCCGGACCCC--CGCGaaCG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 13666 0.7 0.265555
Target:  5'- cCGCCGCGGg--GGGGGCGCgggGCg-- -3'
miRNA:   3'- -GUGGCGCCggaCCCCCGCGaa-CGguu -5'
23569 3' -64.7 NC_005261.1 + 14362 0.78 0.069483
Target:  5'- aGCCGCGGCCgGGGcGGCGCggugGCCc- -3'
miRNA:   3'- gUGGCGCCGGaCCC-CCGCGaa--CGGuu -5'
23569 3' -64.7 NC_005261.1 + 14694 0.66 0.427877
Target:  5'- gAUgGUGGCgaggGGGGGCGCcuucgGCCGAg -3'
miRNA:   3'- gUGgCGCCGga--CCCCCGCGaa---CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 15864 0.67 0.410865
Target:  5'- gGCCGCGGU--GGGGccGCGCgaGCCGc -3'
miRNA:   3'- gUGGCGCCGgaCCCC--CGCGaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 17137 0.71 0.205037
Target:  5'- -cCCGCacGGCCUGGaGGCGCUggcgGCCGc -3'
miRNA:   3'- guGGCG--CCGGACCcCCGCGAa---CGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.