miRNA display CGI


Results 1 - 20 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 138135 0.67 0.370229
Target:  5'- gCGgCGgGGCCcGGGGGCGC--GCCc- -3'
miRNA:   3'- -GUgGCgCCGGaCCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 136645 0.66 0.419319
Target:  5'- cCACCGCGccGCCaaccgcUGGGGGCucggcgcgccGCUgcgGCCGGu -3'
miRNA:   3'- -GUGGCGC--CGG------ACCCCCG----------CGAa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 135823 0.68 0.362438
Target:  5'- cCGCCGCgcggGGCCcGcGGGcGCGCUcGCCGc -3'
miRNA:   3'- -GUGGCG----CCGGaC-CCC-CGCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 135694 0.7 0.271722
Target:  5'- gCGCCGCGGCgCUGGcGGC-CUacUGCCGc -3'
miRNA:   3'- -GUGGCGCCG-GACCcCCGcGA--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 135521 0.71 0.215075
Target:  5'- gGCCGgGGCCaGGGgcccGGCGCcgGCCAAa -3'
miRNA:   3'- gUGGCgCCGGaCCC----CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 135302 0.69 0.284398
Target:  5'- gGCCGCGGCggUGGaGGUGCUgggGCCGGa -3'
miRNA:   3'- gUGGCGCCGg-ACCcCCGCGAa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 134560 0.66 0.427877
Target:  5'- gGCCGCGGCCUGccGGcCGCg-GCCu- -3'
miRNA:   3'- gUGGCGCCGGACccCC-GCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 134462 0.68 0.335345
Target:  5'- gCGCUGCGGCCUGccgcgaggcgcuagaGGcGGCGCggugcGCCGc -3'
miRNA:   3'- -GUGGCGCCGGAC---------------CC-CCGCGaa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 133847 0.66 0.454157
Target:  5'- gCGCCGUGGCC-GGcGcGCGCgacUGCCGc -3'
miRNA:   3'- -GUGGCGCCGGaCCcC-CGCGa--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 133712 0.67 0.410865
Target:  5'- uCGCCGCGGCgCccgcGcGGGGCGCgacugggGCCc- -3'
miRNA:   3'- -GUGGCGCCG-Ga---C-CCCCGCGaa-----CGGuu -5'
23569 3' -64.7 NC_005261.1 + 133526 0.67 0.402519
Target:  5'- uCACCGUGGaCCUcucGGGGCGCgcaGCgCAGc -3'
miRNA:   3'- -GUGGCGCC-GGAc--CCCCGCGaa-CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 133275 0.83 0.028395
Target:  5'- aCGCCGCGGCC-GGGGGCGCcuggGCCGc -3'
miRNA:   3'- -GUGGCGCCGGaCCCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 132770 0.71 0.205037
Target:  5'- aGCgGgGGCUgcucggGGGGGCGCUguUGCCGc -3'
miRNA:   3'- gUGgCgCCGGa-----CCCCCGCGA--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 132606 0.73 0.168861
Target:  5'- gGCCcgGCGaGCCgccaGGGGGCGCUggcGCCGAg -3'
miRNA:   3'- gUGG--CGC-CGGa---CCCCCGCGAa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 128369 0.7 0.252976
Target:  5'- uCGCCGgGGCaggccggCUGGGGcGgGCUUGCCc- -3'
miRNA:   3'- -GUGGCgCCG-------GACCCC-CgCGAACGGuu -5'
23569 3' -64.7 NC_005261.1 + 128312 0.7 0.252976
Target:  5'- uCGCCGgGGCaggccggCUGGGGcGgGCUUGCCc- -3'
miRNA:   3'- -GUGGCgCCG-------GACCCC-CgCGAACGGuu -5'
23569 3' -64.7 NC_005261.1 + 127333 0.67 0.402519
Target:  5'- cCGCgGgGGCCggagcgGcGGGGCGCUggGCCc- -3'
miRNA:   3'- -GUGgCgCCGGa-----C-CCCCGCGAa-CGGuu -5'
23569 3' -64.7 NC_005261.1 + 127319 0.68 0.31812
Target:  5'- -gUCGCGGCCgGcGGcGGCGC-UGCCGc -3'
miRNA:   3'- guGGCGCCGGaC-CC-CCGCGaACGGUu -5'
23569 3' -64.7 NC_005261.1 + 127273 0.67 0.378134
Target:  5'- gGCgGCGGCCcacgcgucUGGGGGCGg--GCCc- -3'
miRNA:   3'- gUGgCGCCGG--------ACCCCCGCgaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 127177 0.69 0.297537
Target:  5'- gGCgGC-GCCUGGGcGGCGCccgagUGCCGc -3'
miRNA:   3'- gUGgCGcCGGACCC-CCGCGa----ACGGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.