miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 126937 0.66 0.445299
Target:  5'- gCAgCGCGGCCa-GGGGCGCcggGCgCGGg -3'
miRNA:   3'- -GUgGCGCCGGacCCCCGCGaa-CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 126070 0.66 0.46311
Target:  5'- aGCCGCccgccGGCCUcGGcGGGCGCgc-CCAu -3'
miRNA:   3'- gUGGCG-----CCGGA-CC-CCCGCGaacGGUu -5'
23569 3' -64.7 NC_005261.1 + 123403 0.68 0.339756
Target:  5'- cCGCCGCuugccGGCCaGGGGcGgGCUcGCCAc -3'
miRNA:   3'- -GUGGCG-----CCGGaCCCC-CgCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 123104 0.68 0.347201
Target:  5'- uCGCCGCGGC--GGGaaaguGGCGCUUGgCAu -3'
miRNA:   3'- -GUGGCGCCGgaCCC-----CCGCGAACgGUu -5'
23569 3' -64.7 NC_005261.1 + 122437 0.66 0.454157
Target:  5'- gCGgCGCuGGCCgcgcGGGcGGCGCccGCCAGc -3'
miRNA:   3'- -GUgGCG-CCGGa---CCC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 122380 1.05 0.000644
Target:  5'- cCACCGCGGCCUGGGGGCGCUUGCCAAg -3'
miRNA:   3'- -GUGGCGCCGGACCCCCGCGAACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 121784 0.76 0.101236
Target:  5'- gGCCGCGGCCggcgggcugggcaGGGGGCGCgugGCUGGg -3'
miRNA:   3'- gUGGCGCCGGa------------CCCCCGCGaa-CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 121191 0.68 0.347201
Target:  5'- gGCCGgGGCCgggcccGGGGCcGCggGCCGGa -3'
miRNA:   3'- gUGGCgCCGGac----CCCCG-CGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 120415 0.67 0.414234
Target:  5'- gCGCUgaGCGGCCUGGGcuggugaacaugcgcGGCGUgcGCCu- -3'
miRNA:   3'- -GUGG--CGCCGGACCC---------------CCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 119127 0.68 0.362438
Target:  5'- gGCCGCGGCCgc--GGCGCg-GCCAu -3'
miRNA:   3'- gUGGCGCCGGacccCCGCGaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 118868 0.66 0.453267
Target:  5'- -cCCGCGGcCCUGGccucggccaccgcGGGCGCgcuggugGCCu- -3'
miRNA:   3'- guGGCGCC-GGACC-------------CCCGCGaa-----CGGuu -5'
23569 3' -64.7 NC_005261.1 + 118367 0.67 0.386151
Target:  5'- gGCCG-GGCgCUGGGGcGCGCggcCCGAg -3'
miRNA:   3'- gUGGCgCCG-GACCCC-CGCGaacGGUU- -5'
23569 3' -64.7 NC_005261.1 + 118294 0.65 0.469432
Target:  5'- cCGCCGCGGgCaccGGGGcgcacuuccgcaccGCGCUgcugGCCAu -3'
miRNA:   3'- -GUGGCGCCgGa--CCCC--------------CGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 118243 0.69 0.290253
Target:  5'- gGCCGCGGCCgGGgacgauaGGGCGgUcgcUGCCGc -3'
miRNA:   3'- gUGGCGCCGGaCC-------CCCGCgA---ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 118190 0.69 0.284398
Target:  5'- gGCCGCGggccccgcGCCUGccgcgcugcgcGGGGCGCUgacgGCCGc -3'
miRNA:   3'- gUGGCGC--------CGGAC-----------CCCCGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 117936 0.66 0.466717
Target:  5'- gGCUGCGGCCcgUGcgcgcucgcugcuacGGGcGCGCUcgcUGCCAu -3'
miRNA:   3'- gUGGCGCCGG--AC---------------CCC-CGCGA---ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 114537 0.66 0.427877
Target:  5'- gACCGggcgGGCCUcgcgucGGGGGCGCUcGCUc- -3'
miRNA:   3'- gUGGCg---CCGGA------CCCCCGCGAaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 113641 0.69 0.311142
Target:  5'- gGCCGcCGGgaCUGGGGGCGggUGCa-- -3'
miRNA:   3'- gUGGC-GCCg-GACCCCCGCgaACGguu -5'
23569 3' -64.7 NC_005261.1 + 113324 0.7 0.271722
Target:  5'- cCGCCGagGGCUUGaaGGGGCGCccGCCGGg -3'
miRNA:   3'- -GUGGCg-CCGGAC--CCCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 110982 0.68 0.325215
Target:  5'- aCGCCGCcuucgugcGCCUGGGGaCGC-UGCCGc -3'
miRNA:   3'- -GUGGCGc-------CGGACCCCcGCGaACGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.