miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 62421 0.68 0.979807
Target:  5'- --cGCCCGCcGAGGCCAgcgcGAGCc -3'
miRNA:   3'- cauCGGGUGcUUUCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 33497 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 62890 0.68 0.979807
Target:  5'- -cAGCCCGCGcGAGGCgGggcgGGGCGg -3'
miRNA:   3'- caUCGGGUGC-UUUCGgUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 36959 0.68 0.979807
Target:  5'- -gGGCCCAUG-GAGCCcuuUGcgGAGCGc -3'
miRNA:   3'- caUCGGGUGCuUUCGGu--AUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 138014 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 121992 0.67 0.98205
Target:  5'- -cAGCUgGCGGAGGUCAUgGUUG-GCAu -3'
miRNA:   3'- caUCGGgUGCUUUCGGUA-UAACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 99010 0.67 0.98205
Target:  5'- cGgcGCgCGCGAGGGCCAUGgc-GGCu -3'
miRNA:   3'- -CauCGgGUGCUUUCGGUAUaacUCGu -5'
23570 3' -49.8 NC_005261.1 + 21551 0.67 0.98205
Target:  5'- aGgcGCUCGCGAuuGGGCCGgcgccgcgGAGCAg -3'
miRNA:   3'- -CauCGGGUGCU--UUCGGUauaa----CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 38922 0.67 0.984101
Target:  5'- -gGGCCCGCGcgccAAGCCGgcggccGGGCGg -3'
miRNA:   3'- caUCGGGUGCu---UUCGGUauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 76650 0.67 0.984101
Target:  5'- --uGCCCACGAAcacGGCCAUcaccAGCGc -3'
miRNA:   3'- cauCGGGUGCUU---UCGGUAuaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 94470 0.67 0.984101
Target:  5'- --cGcCCCACGAGcaccuucaggGGCacgGUGUUGAGCAg -3'
miRNA:   3'- cauC-GGGUGCUU----------UCGg--UAUAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 43367 0.67 0.984101
Target:  5'- --cGCCCGCccGGGCCGUGcgcGAGCGc -3'
miRNA:   3'- cauCGGGUGcuUUCGGUAUaa-CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 98364 0.67 0.985969
Target:  5'- -cGGCCUGCu--GGCCGUGUgccUGGGCGc -3'
miRNA:   3'- caUCGGGUGcuuUCGGUAUA---ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 13998 0.67 0.985969
Target:  5'- --uGCCCGCGgcGGCg--GUUGGGCu -3'
miRNA:   3'- cauCGGGUGCuuUCGguaUAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 70705 0.67 0.987664
Target:  5'- -cGGCCCGCGcgGGCaCGgccgaGAGCAc -3'
miRNA:   3'- caUCGGGUGCuuUCG-GUauaa-CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 6917 0.67 0.987664
Target:  5'- cGUAGgCCACGAAcuccgggucGGCCAccUUGAGg- -3'
miRNA:   3'- -CAUCgGGUGCUU---------UCGGUauAACUCgu -5'
23570 3' -49.8 NC_005261.1 + 60188 0.67 0.987664
Target:  5'- -gGGCCCGCGAccaccGGCUGgggcgGAGCGg -3'
miRNA:   3'- caUCGGGUGCUu----UCGGUauaa-CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 64365 0.67 0.987664
Target:  5'- --cGCCCACGAcccgcuuaaAAGCCuccg-GGGCGc -3'
miRNA:   3'- cauCGGGUGCU---------UUCGGuauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 3365 0.67 0.987664
Target:  5'- -gGGCCCGCGggGGCgc----GGGCGc -3'
miRNA:   3'- caUCGGGUGCuuUCGguauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 96028 0.67 0.987664
Target:  5'- gGgcGCCCGCGcgGcGCCGUG--GAGCGg -3'
miRNA:   3'- -CauCGGGUGCuuU-CGGUAUaaCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.