miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 73823 0.68 0.977362
Target:  5'- --cGCCCGCGccuAGCCcgGcucUUGGGCGa -3'
miRNA:   3'- cauCGGGUGCuu-UCGGuaU---AACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 12027 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 16795 0.68 0.976847
Target:  5'- -aAGCCCGCcaGGAAGCCGUcccagaacggGGGCGu -3'
miRNA:   3'- caUCGGGUG--CUUUCGGUAuaa-------CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 22698 0.68 0.974705
Target:  5'- -gGGCCCgGCGAcgAGGCCGUcgagGAGCc -3'
miRNA:   3'- caUCGGG-UGCU--UUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 23470 0.68 0.974705
Target:  5'- -aGGCCCGCGGcggcgagugcgcGGGCCcgccUGGGCAg -3'
miRNA:   3'- caUCGGGUGCU------------UUCGGuauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 117687 0.68 0.968723
Target:  5'- -gGGCCCGCGGcgAGGCCGgcccUGAGg- -3'
miRNA:   3'- caUCGGGUGCU--UUCGGUaua-ACUCgu -5'
23570 3' -49.8 NC_005261.1 + 121992 0.67 0.98205
Target:  5'- -cAGCUgGCGGAGGUCAUgGUUG-GCAu -3'
miRNA:   3'- caUCGGgUGCUUUCGGUA-UAACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 38922 0.67 0.984101
Target:  5'- -gGGCCCGCGcgccAAGCCGgcggccGGGCGg -3'
miRNA:   3'- caUCGGGUGCu---UUCGGUauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 70705 0.67 0.987664
Target:  5'- -cGGCCCGCGcgGGCaCGgccgaGAGCAc -3'
miRNA:   3'- caUCGGGUGCuuUCG-GUauaa-CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 40239 0.66 0.994771
Target:  5'- cUGGCCC--GggGGCCG---UGAGCGc -3'
miRNA:   3'- cAUCGGGugCuuUCGGUauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 71437 0.66 0.994436
Target:  5'- -gGGCCCGCGGcgcgcAGCCGccgccucccgGAGCAu -3'
miRNA:   3'- caUCGGGUGCUu----UCGGUauaa------CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 73854 0.66 0.993901
Target:  5'- cGgcGCCC-CGGAGGCUuuuaagcggGUcgUGGGCGu -3'
miRNA:   3'- -CauCGGGuGCUUUCGG---------UAuaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 63464 0.66 0.993901
Target:  5'- --cGCCCGCGAGGGUugCAcGgcGAGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCG--GUaUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 34289 0.66 0.993901
Target:  5'- -cGGCCgGCGggGacGCCGg---GAGCGa -3'
miRNA:   3'- caUCGGgUGCuuU--CGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 29705 0.66 0.993901
Target:  5'- -cGGCCUGCGu-GGCCA---UGAGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUauaACUCGu -5'
23570 3' -49.8 NC_005261.1 + 83351 0.66 0.993808
Target:  5'- cGUGGCCCGCaGGAAGgCGUccacgucGgcGAGCGc -3'
miRNA:   3'- -CAUCGGGUG-CUUUCgGUA-------UaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 40179 0.66 0.993326
Target:  5'- -gGGCCCACagGggGGCCAUcuuuauuucGUacagcgaguacgcgaUGAGCGu -3'
miRNA:   3'- caUCGGGUG--CuuUCGGUA---------UA---------------ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 74904 0.66 0.992918
Target:  5'- -cGGCCCGCGcuGGCCGcgcgggGgaGGGCGa -3'
miRNA:   3'- caUCGGGUGCuuUCGGUa-----UaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 131327 0.66 0.992918
Target:  5'- cGUGGCCUACGuguaccuGGCCuacuUUGAGgGg -3'
miRNA:   3'- -CAUCGGGUGCuu-----UCGGuau-AACUCgU- -5'
23570 3' -49.8 NC_005261.1 + 79958 0.66 0.990576
Target:  5'- cGUGGUCCugGAuguGGUCGUAggUGAacuGCAg -3'
miRNA:   3'- -CAUCGGGugCUu--UCGGUAUa-ACU---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.