miRNA display CGI


Results 61 - 80 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 65453 0.69 0.961797
Target:  5'- -cGGCCCcggacgcgugcGCGGccGCCGUGcUGGGCAu -3'
miRNA:   3'- caUCGGG-----------UGCUuuCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 7407 0.68 0.971828
Target:  5'- -gAGCgCACGguGGCCuggcccucgacGUAUUGGGCGu -3'
miRNA:   3'- caUCGgGUGCuuUCGG-----------UAUAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 60974 0.68 0.971828
Target:  5'- --cGCCCGCGAGcgcGCCcuuUUGAGCc -3'
miRNA:   3'- cauCGGGUGCUUu--CGGuauAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 36568 0.68 0.974705
Target:  5'- -cGGCCUACGAGGcGCagAUGcUGAGCAc -3'
miRNA:   3'- caUCGGGUGCUUU-CGg-UAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 127987 0.68 0.974705
Target:  5'- -aGGCCCGCGGcggcgagugcgcGGGCCcgccUGGGCAg -3'
miRNA:   3'- caUCGGGUGCU------------UUCGGuauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 47577 0.68 0.974705
Target:  5'- gGUGG-CCGCGAcGGCCAggcaGGGCAg -3'
miRNA:   3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 101240 0.66 0.992918
Target:  5'- -cAGCCCGCGGGcuCCGgcugGAGCc -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 116545 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 27759 0.68 0.979095
Target:  5'- cGUGGUCCACGAGAGCagcccgcccaGGCAc -3'
miRNA:   3'- -CAUCGGGUGCUUUCGguauaac---UCGU- -5'
23570 3' -49.8 NC_005261.1 + 331 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 19016 0.68 0.979807
Target:  5'- --cGCCC-CGGcaGGGCCAUGgcGGGCGc -3'
miRNA:   3'- cauCGGGuGCU--UUCGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 21315 0.68 0.979807
Target:  5'- -cAGCCCGCGgcGGCUGUcgacGUUG-GCGa -3'
miRNA:   3'- caUCGGGUGCuuUCGGUA----UAACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 94470 0.67 0.984101
Target:  5'- --cGcCCCACGAGcaccuucaggGGCacgGUGUUGAGCAg -3'
miRNA:   3'- cauC-GGGUGCUU----------UCGg--UAUAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 13998 0.67 0.985969
Target:  5'- --uGCCCGCGgcGGCg--GUUGGGCu -3'
miRNA:   3'- cauCGGGUGCuuUCGguaUAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 6917 0.67 0.987664
Target:  5'- cGUAGgCCACGAAcuccgggucGGCCAccUUGAGg- -3'
miRNA:   3'- -CAUCgGGUGCUU---------UCGGUauAACUCgu -5'
23570 3' -49.8 NC_005261.1 + 60188 0.67 0.987664
Target:  5'- -gGGCCCGCGAccaccGGCUGgggcgGAGCGg -3'
miRNA:   3'- caUCGGGUGCUu----UCGGUauaa-CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 64365 0.67 0.987664
Target:  5'- --cGCCCACGAcccgcuuaaAAGCCuccg-GGGCGc -3'
miRNA:   3'- cauCGGGUGCU---------UUCGGuauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 26432 0.66 0.990312
Target:  5'- -cGGCCgACGcGAGCCAggcguccagGGGCAc -3'
miRNA:   3'- caUCGGgUGCuUUCGGUauaa-----CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 14778 0.66 0.990576
Target:  5'- -aGGCCCGCGAcGGCguCAUGcgcGAGCu -3'
miRNA:   3'- caUCGGGUGCUuUCG--GUAUaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 49809 0.66 0.991813
Target:  5'- gGUGGCCCGCGAAGuCCAagaUGUcGuGCu -3'
miRNA:   3'- -CAUCGGGUGCUUUcGGU---AUAaCuCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.