miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 79958 0.66 0.990576
Target:  5'- cGUGGUCCugGAuguGGUCGUAggUGAacuGCAg -3'
miRNA:   3'- -CAUCGGGugCUu--UCGGUAUa-ACU---CGU- -5'
23570 3' -49.8 NC_005261.1 + 30706 0.71 0.903691
Target:  5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5'
23570 3' -49.8 NC_005261.1 + 86999 0.73 0.843678
Target:  5'- cGUGGCCCucguCGAAGGCCAag-UGcGCGg -3'
miRNA:   3'- -CAUCGGGu---GCUUUCGGUauaACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 33497 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 115128 0.7 0.939525
Target:  5'- cGgcGCCCACGAuggugucguacacGAGCCGgggGUcGGGCGc -3'
miRNA:   3'- -CauCGGGUGCU-------------UUCGGUa--UAaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 117687 0.68 0.968723
Target:  5'- -gGGCCCGCGGcgAGGCCGgcccUGAGg- -3'
miRNA:   3'- caUCGGGUGCU--UUCGGUaua-ACUCgu -5'
23570 3' -49.8 NC_005261.1 + 46756 0.69 0.965382
Target:  5'- -cAGCCCGCcgaaGAAGGUCAg---GAGCGa -3'
miRNA:   3'- caUCGGGUG----CUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 127987 0.68 0.974705
Target:  5'- -aGGCCCGCGGcggcgagugcgcGGGCCcgccUGGGCAg -3'
miRNA:   3'- caUCGGGUGCU------------UUCGGuauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 19016 0.68 0.979807
Target:  5'- --cGCCC-CGGcaGGGCCAUGgcGGGCGc -3'
miRNA:   3'- cauCGGGuGCU--UUCGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 331 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 27759 0.68 0.979095
Target:  5'- cGUGGUCCACGAGAGCagcccgcccaGGCAc -3'
miRNA:   3'- -CAUCGGGUGCUUUCGguauaac---UCGU- -5'
23570 3' -49.8 NC_005261.1 + 10014 0.73 0.843678
Target:  5'- -gGGCCCAauaaGAAAGCgGUgcgggggcgggGUUGAGCAa -3'
miRNA:   3'- caUCGGGUg---CUUUCGgUA-----------UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 81435 0.72 0.883896
Target:  5'- cGUGGCCCGCu---GCCGgaagUGGGCAa -3'
miRNA:   3'- -CAUCGGGUGcuuuCGGUaua-ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 116545 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 47577 0.68 0.974705
Target:  5'- gGUGG-CCGCGAcGGCCAggcaGGGCAg -3'
miRNA:   3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 101240 0.66 0.992918
Target:  5'- -cAGCCCGCGGGcuCCGgcugGAGCc -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 122804 0.66 0.991813
Target:  5'- -cGGCCCGCGcccGGCCGacucUGGGCu -3'
miRNA:   3'- caUCGGGUGCuu-UCGGUaua-ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 49809 0.66 0.991813
Target:  5'- gGUGGCCCGCGAAGuCCAagaUGUcGuGCu -3'
miRNA:   3'- -CAUCGGGUGCUUUcGGU---AUAaCuCGu -5'
23570 3' -49.8 NC_005261.1 + 27498 0.7 0.940028
Target:  5'- -cAGCCCgcugGCGAAGGUgGUuucGUUGAGCu -3'
miRNA:   3'- caUCGGG----UGCUUUCGgUA---UAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 28920 0.69 0.953874
Target:  5'- --cGCUCGCGGAGGCCA----GGGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCGGUauaaCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.