miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 66335 0.71 0.891201
Target:  5'- -cAGCCCACGAGgucugcgaucuuGGCCAgcgcGAGCu -3'
miRNA:   3'- caUCGGGUGCUU------------UCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 74904 0.66 0.992918
Target:  5'- -cGGCCCGCGcuGGCCGcgcgggGgaGGGCGa -3'
miRNA:   3'- caUCGGGUGCuuUCGGUa-----UaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 54387 0.76 0.694132
Target:  5'- gGgcGCCCGCGAAGGCCGUgccgguuaaggaaGUcgagGAGCAu -3'
miRNA:   3'- -CauCGGGUGCUUUCGGUA-------------UAa---CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 86999 0.73 0.843678
Target:  5'- cGUGGCCCucguCGAAGGCCAag-UGcGCGg -3'
miRNA:   3'- -CAUCGGGu---GCUUUCGGUauaACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 61573 0.71 0.917781
Target:  5'- gGUGGCgCugGugauGGCCGUGUucgUGGGCAg -3'
miRNA:   3'- -CAUCGgGugCuu--UCGGUAUA---ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 63768 0.7 0.946788
Target:  5'- uGUAGCCCACGccGAGGuCCAcGUgcgcgcgcggcugcgUGAGCGu -3'
miRNA:   3'- -CAUCGGGUGC--UUUC-GGUaUA---------------ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 35787 0.69 0.953874
Target:  5'- -aGGCCCGCGGgcGCCAUGgc--GCGg -3'
miRNA:   3'- caUCGGGUGCUuuCGGUAUaacuCGU- -5'
23570 3' -49.8 NC_005261.1 + 46701 0.66 0.994771
Target:  5'- cGUAGCCCGgGuccucGGCCAUGUccGAGa- -3'
miRNA:   3'- -CAUCGGGUgCuu---UCGGUAUAa-CUCgu -5'
23570 3' -49.8 NC_005261.1 + 135223 0.71 0.903691
Target:  5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5'
23570 3' -49.8 NC_005261.1 + 27759 0.68 0.979095
Target:  5'- cGUGGUCCACGAGAGCagcccgcccaGGCAc -3'
miRNA:   3'- -CAUCGGGUGCUUUCGguauaac---UCGU- -5'
23570 3' -49.8 NC_005261.1 + 134222 0.66 0.993901
Target:  5'- -cGGCCUGCGu-GGCCA---UGAGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUauaACUCGu -5'
23570 3' -49.8 NC_005261.1 + 101240 0.66 0.992918
Target:  5'- -cAGCCCGCGGGcuCCGgcugGAGCc -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 331 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 19016 0.68 0.979807
Target:  5'- --cGCCC-CGGcaGGGCCAUGgcGGGCGc -3'
miRNA:   3'- cauCGGGuGCU--UUCGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 21315 0.68 0.979807
Target:  5'- -cAGCCCGCGgcGGCUGUcgacGUUG-GCGa -3'
miRNA:   3'- caUCGGGUGCuuUCGGUA----UAACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 116545 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 23955 0.68 0.979807
Target:  5'- cGUAGCCCGCGcgcGCCAccgcgucguuuuUAaaGAGCAg -3'
miRNA:   3'- -CAUCGGGUGCuuuCGGU------------AUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 25934 0.69 0.965034
Target:  5'- -aAGCUCugGAAGgaaucccgaucccGCCGcgGUUGAGCAg -3'
miRNA:   3'- caUCGGGugCUUU-------------CGGUa-UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 65453 0.69 0.961797
Target:  5'- -cGGCCCcggacgcgugcGCGGccGCCGUGcUGGGCAu -3'
miRNA:   3'- caUCGGG-----------UGCUuuCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 28920 0.69 0.953874
Target:  5'- --cGCUCGCGGAGGCCA----GGGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCGGUauaaCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.