miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 12027 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 79309 0.68 0.977362
Target:  5'- -gAGCCCGCGcaugauGGCCAUGUUGccGUc -3'
miRNA:   3'- caUCGGGUGCuu----UCGGUAUAACu-CGu -5'
23570 3' -49.8 NC_005261.1 + 131327 0.66 0.992918
Target:  5'- cGUGGCCUACGuguaccuGGCCuacuUUGAGgGg -3'
miRNA:   3'- -CAUCGGGUGCuu-----UCGGuau-AACUCgU- -5'
23570 3' -49.8 NC_005261.1 + 73854 0.66 0.993901
Target:  5'- cGgcGCCC-CGGAGGCUuuuaagcggGUcgUGGGCGu -3'
miRNA:   3'- -CauCGGGuGCUUUCGG---------UAuaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 57803 0.7 0.940028
Target:  5'- -gGGCgCGCGAAGGCCGUGaa-GGCGa -3'
miRNA:   3'- caUCGgGUGCUUUCGGUAUaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 107138 0.68 0.968723
Target:  5'- cGgcGCCCACGGccgcGGCCAUGga-GGCGg -3'
miRNA:   3'- -CauCGGGUGCUu---UCGGUAUaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 62421 0.68 0.979807
Target:  5'- --cGCCCGCcGAGGCCAgcgcGAGCc -3'
miRNA:   3'- cauCGGGUGcUUUCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 71437 0.66 0.994436
Target:  5'- -gGGCCCGCGGcgcgcAGCCGccgccucccgGAGCAu -3'
miRNA:   3'- caUCGGGUGCUu----UCGGUauaa------CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 117687 0.68 0.968723
Target:  5'- -gGGCCCGCGGcgAGGCCGgcccUGAGg- -3'
miRNA:   3'- caUCGGGUGCU--UUCGGUaua-ACUCgu -5'
23570 3' -49.8 NC_005261.1 + 40239 0.66 0.994771
Target:  5'- cUGGCCC--GggGGCCG---UGAGCGc -3'
miRNA:   3'- cAUCGGGugCuuUCGGUauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 128329 0.68 0.977362
Target:  5'- -gGGCCUGCGggGGCUccga-GAGCGg -3'
miRNA:   3'- caUCGGGUGCuuUCGGuauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 16795 0.68 0.976847
Target:  5'- -aAGCCCGCcaGGAAGCCGUcccagaacggGGGCGu -3'
miRNA:   3'- caUCGGGUG--CUUUCGGUAuaa-------CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 121992 0.67 0.98205
Target:  5'- -cAGCUgGCGGAGGUCAUgGUUG-GCAu -3'
miRNA:   3'- caUCGGgUGCUUUCGGUA-UAACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 79958 0.66 0.990576
Target:  5'- cGUGGUCCugGAuguGGUCGUAggUGAacuGCAg -3'
miRNA:   3'- -CAUCGGGugCUu--UCGGUAUa-ACU---CGU- -5'
23570 3' -49.8 NC_005261.1 + 83351 0.66 0.993808
Target:  5'- cGUGGCCCGCaGGAAGgCGUccacgucGgcGAGCGc -3'
miRNA:   3'- -CAUCGGGUG-CUUUCgGUA-------UaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 63464 0.66 0.993901
Target:  5'- --cGCCCGCGAGGGUugCAcGgcGAGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCG--GUaUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 19536 0.71 0.902345
Target:  5'- -cGGCCCGCGucaccgccagcGCCGUGggGAGCGc -3'
miRNA:   3'- caUCGGGUGCuuu--------CGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 115128 0.7 0.939525
Target:  5'- cGgcGCCCACGAuggugucguacacGAGCCGgggGUcGGGCGc -3'
miRNA:   3'- -CauCGGGUGCU-------------UUCGGUa--UAaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 45942 0.69 0.957963
Target:  5'- --cGCgCGCGAGGGCCGccagggcgccGUUGAGCAu -3'
miRNA:   3'- cauCGgGUGCUUUCGGUa---------UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 46756 0.69 0.965382
Target:  5'- -cAGCCCGCcgaaGAAGGUCAg---GAGCGa -3'
miRNA:   3'- caUCGGGUG----CUUUCGGUauaaCUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.