miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 70881 0.66 0.994771
Target:  5'- cGUGGCCgGCGGugcacauGGCCGUGcacUUGcGCGc -3'
miRNA:   3'- -CAUCGGgUGCUu------UCGGUAU---AACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 115566 0.69 0.960674
Target:  5'- uGUGGCagcaCACGAAcgcggcgaggaacuGGCCGUAcgUGAGCc -3'
miRNA:   3'- -CAUCGg---GUGCUU--------------UCGGUAUa-ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 37000 0.69 0.961797
Target:  5'- -gAGCCCGCGGgcugcgcgGGGCCAguuugcggGGGCGg -3'
miRNA:   3'- caUCGGGUGCU--------UUCGGUauaa----CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 76056 0.68 0.977362
Target:  5'- cGUGGCCgGCGGgcGCCAcca-GGGCGg -3'
miRNA:   3'- -CAUCGGgUGCUuuCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 70705 0.67 0.987664
Target:  5'- -cGGCCCGCGcgGGCaCGgccgaGAGCAc -3'
miRNA:   3'- caUCGGGUGCuuUCG-GUauaa-CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 61573 0.71 0.917781
Target:  5'- gGUGGCgCugGugauGGCCGUGUucgUGGGCAg -3'
miRNA:   3'- -CAUCGgGugCuu--UCGGUAUA---ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 35787 0.69 0.953874
Target:  5'- -aGGCCCGCGGgcGCCAUGgc--GCGg -3'
miRNA:   3'- caUCGGGUGCUuuCGGUAUaacuCGU- -5'
23570 3' -49.8 NC_005261.1 + 40179 0.66 0.993326
Target:  5'- -gGGCCCACagGggGGCCAUcuuuauuucGUacagcgaguacgcgaUGAGCGu -3'
miRNA:   3'- caUCGGGUG--CuuUCGGUA---------UA---------------ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 22698 0.68 0.974705
Target:  5'- -gGGCCCgGCGAcgAGGCCGUcgagGAGCc -3'
miRNA:   3'- caUCGGG-UGCU--UUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 12027 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 29705 0.66 0.993901
Target:  5'- -cGGCCUGCGu-GGCCA---UGAGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUauaACUCGu -5'
23570 3' -49.8 NC_005261.1 + 34289 0.66 0.993901
Target:  5'- -cGGCCgGCGggGacGCCGg---GAGCGa -3'
miRNA:   3'- caUCGGgUGCuuU--CGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 66335 0.71 0.891201
Target:  5'- -cAGCCCACGAGgucugcgaucuuGGCCAgcgcGAGCu -3'
miRNA:   3'- caUCGGGUGCUU------------UCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 30706 0.71 0.903691
Target:  5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5'
23570 3' -49.8 NC_005261.1 + 46756 0.69 0.965382
Target:  5'- -cAGCCCGCcgaaGAAGGUCAg---GAGCGa -3'
miRNA:   3'- caUCGGGUG----CUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 62890 0.68 0.979807
Target:  5'- -cAGCCCGCGcGAGGCgGggcgGGGCGg -3'
miRNA:   3'- caUCGGGUGC-UUUCGgUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 38922 0.67 0.984101
Target:  5'- -gGGCCCGCGcgccAAGCCGgcggccGGGCGg -3'
miRNA:   3'- caUCGGGUGCu---UUCGGUauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 63464 0.66 0.993901
Target:  5'- --cGCCCGCGAGGGUugCAcGgcGAGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCG--GUaUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 73823 0.68 0.977362
Target:  5'- --cGCCCGCGccuAGCCcgGcucUUGGGCGa -3'
miRNA:   3'- cauCGGGUGCuu-UCGGuaU---AACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 23470 0.68 0.974705
Target:  5'- -aGGCCCGCGGcggcgagugcgcGGGCCcgccUGGGCAg -3'
miRNA:   3'- caUCGGGUGCU------------UUCGGuauaACUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.