miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 35207 0.7 0.923752
Target:  5'- -cGGCCCGCgcguucuucGAGAGCCAcgcgGAGCGc -3'
miRNA:   3'- caUCGGGUG---------CUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 65938 0.7 0.933812
Target:  5'- cGUGGCCCACGucgcgaaccucAGCCGgcugcUGGGCGa -3'
miRNA:   3'- -CAUCGGGUGCuu---------UCGGUaua--ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 115128 0.7 0.939525
Target:  5'- cGgcGCCCACGAuggugucguacacGAGCCGgggGUcGGGCGc -3'
miRNA:   3'- -CauCGGGUGCU-------------UUCGGUa--UAaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 57803 0.7 0.940028
Target:  5'- -gGGCgCGCGAAGGCCGUGaa-GGCGa -3'
miRNA:   3'- caUCGgGUGCUUUCGGUAUaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 27498 0.7 0.940028
Target:  5'- -cAGCCCgcugGCGAAGGUgGUuucGUUGAGCu -3'
miRNA:   3'- caUCGGG----UGCUUUCGgUA---UAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 63768 0.7 0.946788
Target:  5'- uGUAGCCCACGccGAGGuCCAcGUgcgcgcgcggcugcgUGAGCGu -3'
miRNA:   3'- -CAUCGGGUGC--UUUC-GGUaUA---------------ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 28920 0.69 0.953874
Target:  5'- --cGCUCGCGGAGGCCA----GGGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 35787 0.69 0.953874
Target:  5'- -aGGCCCGCGGgcGCCAUGgc--GCGg -3'
miRNA:   3'- caUCGGGUGCUuuCGGUAUaacuCGU- -5'
23570 3' -49.8 NC_005261.1 + 45942 0.69 0.957963
Target:  5'- --cGCgCGCGAGGGCCGccagggcgccGUUGAGCAu -3'
miRNA:   3'- cauCGgGUGCUUUCGGUa---------UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 115566 0.69 0.960674
Target:  5'- uGUGGCagcaCACGAAcgcggcgaggaacuGGCCGUAcgUGAGCc -3'
miRNA:   3'- -CAUCGg---GUGCUU--------------UCGGUAUa-ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 37000 0.69 0.961797
Target:  5'- -gAGCCCGCGGgcugcgcgGGGCCAguuugcggGGGCGg -3'
miRNA:   3'- caUCGGGUGCU--------UUCGGUauaa----CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 65453 0.69 0.961797
Target:  5'- -cGGCCCcggacgcgugcGCGGccGCCGUGcUGGGCAu -3'
miRNA:   3'- caUCGGG-----------UGCUuuCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 25934 0.69 0.965034
Target:  5'- -aAGCUCugGAAGgaaucccgaucccGCCGcgGUUGAGCAg -3'
miRNA:   3'- caUCGGGugCUUU-------------CGGUa-UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 15246 0.69 0.965382
Target:  5'- aGUGGCCCugcaGGAGGCCAcc--GAGCc -3'
miRNA:   3'- -CAUCGGGug--CUUUCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 46756 0.69 0.965382
Target:  5'- -cAGCCCGCcgaaGAAGGUCAg---GAGCGa -3'
miRNA:   3'- caUCGGGUG----CUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 107138 0.68 0.968723
Target:  5'- cGgcGCCCACGGccgcGGCCAUGga-GGCGg -3'
miRNA:   3'- -CauCGGGUGCUu---UCGGUAUaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 25057 0.68 0.968723
Target:  5'- gGUGG-CCAUGAcGGCCAg---GAGCAg -3'
miRNA:   3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 117687 0.68 0.968723
Target:  5'- -gGGCCCGCGGcgAGGCCGgcccUGAGg- -3'
miRNA:   3'- caUCGGGUGCU--UUCGGUaua-ACUCgu -5'
23570 3' -49.8 NC_005261.1 + 60974 0.68 0.971828
Target:  5'- --cGCCCGCGAGcgcGCCcuuUUGAGCc -3'
miRNA:   3'- cauCGGGUGCUUu--CGGuauAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 7407 0.68 0.971828
Target:  5'- -gAGCgCACGguGGCCuggcccucgacGUAUUGGGCGu -3'
miRNA:   3'- caUCGgGUGCuuUCGG-----------UAUAACUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.