miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 25057 0.68 0.968723
Target:  5'- gGUGG-CCAUGAcGGCCAg---GAGCAg -3'
miRNA:   3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 25934 0.69 0.965034
Target:  5'- -aAGCUCugGAAGgaaucccgaucccGCCGcgGUUGAGCAg -3'
miRNA:   3'- caUCGGGugCUUU-------------CGGUa-UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 26432 0.66 0.990312
Target:  5'- -cGGCCgACGcGAGCCAggcguccagGGGCAc -3'
miRNA:   3'- caUCGGgUGCuUUCGGUauaa-----CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 27498 0.7 0.940028
Target:  5'- -cAGCCCgcugGCGAAGGUgGUuucGUUGAGCu -3'
miRNA:   3'- caUCGGG----UGCUUUCGgUA---UAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 27759 0.68 0.979095
Target:  5'- cGUGGUCCACGAGAGCagcccgcccaGGCAc -3'
miRNA:   3'- -CAUCGGGUGCUUUCGguauaac---UCGU- -5'
23570 3' -49.8 NC_005261.1 + 28920 0.69 0.953874
Target:  5'- --cGCUCGCGGAGGCCA----GGGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 29705 0.66 0.993901
Target:  5'- -cGGCCUGCGu-GGCCA---UGAGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUauaACUCGu -5'
23570 3' -49.8 NC_005261.1 + 30706 0.71 0.903691
Target:  5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5'
23570 3' -49.8 NC_005261.1 + 30892 0.74 0.798001
Target:  5'- -aGGUCCgcaacGCGGAGGCCGUGcUGGGCGa -3'
miRNA:   3'- caUCGGG-----UGCUUUCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 33497 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 34289 0.66 0.993901
Target:  5'- -cGGCCgGCGggGacGCCGg---GAGCGa -3'
miRNA:   3'- caUCGGgUGCuuU--CGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 35207 0.7 0.923752
Target:  5'- -cGGCCCGCgcguucuucGAGAGCCAcgcgGAGCGc -3'
miRNA:   3'- caUCGGGUG---------CUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 35787 0.69 0.953874
Target:  5'- -aGGCCCGCGGgcGCCAUGgc--GCGg -3'
miRNA:   3'- caUCGGGUGCUuuCGGUAUaacuCGU- -5'
23570 3' -49.8 NC_005261.1 + 36568 0.68 0.974705
Target:  5'- -cGGCCUACGAGGcGCagAUGcUGAGCAc -3'
miRNA:   3'- caUCGGGUGCUUU-CGg-UAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 36959 0.68 0.979807
Target:  5'- -gGGCCCAUG-GAGCCcuuUGcgGAGCGc -3'
miRNA:   3'- caUCGGGUGCuUUCGGu--AUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 37000 0.69 0.961797
Target:  5'- -gAGCCCGCGGgcugcgcgGGGCCAguuugcggGGGCGg -3'
miRNA:   3'- caUCGGGUGCU--------UUCGGUauaa----CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 38922 0.67 0.984101
Target:  5'- -gGGCCCGCGcgccAAGCCGgcggccGGGCGg -3'
miRNA:   3'- caUCGGGUGCu---UUCGGUauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 40179 0.66 0.993326
Target:  5'- -gGGCCCACagGggGGCCAUcuuuauuucGUacagcgaguacgcgaUGAGCGu -3'
miRNA:   3'- caUCGGGUG--CuuUCGGUA---------UA---------------ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 40239 0.66 0.994771
Target:  5'- cUGGCCC--GggGGCCG---UGAGCGc -3'
miRNA:   3'- cAUCGGGugCuuUCGGUauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 43367 0.67 0.984101
Target:  5'- --cGCCCGCccGGGCCGUGcgcGAGCGc -3'
miRNA:   3'- cauCGGGUGcuUUCGGUAUaa-CUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.