miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 331 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 3365 0.67 0.987664
Target:  5'- -gGGCCCGCGggGGCgc----GGGCGc -3'
miRNA:   3'- caUCGGGUGCuuUCGguauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 3766 0.73 0.834945
Target:  5'- --cGCCCACGAuggcGGCCAgGUaGAGCGc -3'
miRNA:   3'- cauCGGGUGCUu---UCGGUaUAaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 6917 0.67 0.987664
Target:  5'- cGUAGgCCACGAAcuccgggucGGCCAccUUGAGg- -3'
miRNA:   3'- -CAUCgGGUGCUU---------UCGGUauAACUCgu -5'
23570 3' -49.8 NC_005261.1 + 7407 0.68 0.971828
Target:  5'- -gAGCgCACGguGGCCuggcccucgacGUAUUGGGCGu -3'
miRNA:   3'- caUCGgGUGCuuUCGG-----------UAUAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 10014 0.73 0.843678
Target:  5'- -gGGCCCAauaaGAAAGCgGUgcgggggcgggGUUGAGCAa -3'
miRNA:   3'- caUCGGGUg---CUUUCGgUA-----------UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 12027 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 12159 0.67 0.989196
Target:  5'- --cGCCCGCcGAGGCCGgc--GGGCGg -3'
miRNA:   3'- cauCGGGUGcUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 12524 0.71 0.905026
Target:  5'- -gAGCCCGCGgcGGCCGUcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 13998 0.67 0.985969
Target:  5'- --uGCCCGCGgcGGCg--GUUGGGCu -3'
miRNA:   3'- cauCGGGUGCuuUCGguaUAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 14778 0.66 0.990576
Target:  5'- -aGGCCCGCGAcGGCguCAUGcgcGAGCu -3'
miRNA:   3'- caUCGGGUGCUuUCG--GUAUaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 15246 0.69 0.965382
Target:  5'- aGUGGCCCugcaGGAGGCCAcc--GAGCc -3'
miRNA:   3'- -CAUCGGGug--CUUUCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 16795 0.68 0.976847
Target:  5'- -aAGCCCGCcaGGAAGCCGUcccagaacggGGGCGu -3'
miRNA:   3'- caUCGGGUG--CUUUCGGUAuaa-------CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 19016 0.68 0.979807
Target:  5'- --cGCCC-CGGcaGGGCCAUGgcGGGCGc -3'
miRNA:   3'- cauCGGGuGCU--UUCGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 19536 0.71 0.902345
Target:  5'- -cGGCCCGCGucaccgccagcGCCGUGggGAGCGc -3'
miRNA:   3'- caUCGGGUGCuuu--------CGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 21315 0.68 0.979807
Target:  5'- -cAGCCCGCGgcGGCUGUcgacGUUG-GCGa -3'
miRNA:   3'- caUCGGGUGCuuUCGGUA----UAACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 21551 0.67 0.98205
Target:  5'- aGgcGCUCGCGAuuGGGCCGgcgccgcgGAGCAg -3'
miRNA:   3'- -CauCGGGUGCU--UUCGGUauaa----CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 22698 0.68 0.974705
Target:  5'- -gGGCCCgGCGAcgAGGCCGUcgagGAGCc -3'
miRNA:   3'- caUCGGG-UGCU--UUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 23470 0.68 0.974705
Target:  5'- -aGGCCCGCGGcggcgagugcgcGGGCCcgccUGGGCAg -3'
miRNA:   3'- caUCGGGUGCU------------UUCGGuauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 23955 0.68 0.979807
Target:  5'- cGUAGCCCGCGcgcGCCAccgcgucguuuuUAaaGAGCAg -3'
miRNA:   3'- -CAUCGGGUGCuuuCGGU------------AUaaCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.