miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 138014 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 135223 0.71 0.903691
Target:  5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5'
23570 3' -49.8 NC_005261.1 + 134222 0.66 0.993901
Target:  5'- -cGGCCUGCGu-GGCCA---UGAGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUauaACUCGu -5'
23570 3' -49.8 NC_005261.1 + 131327 0.66 0.992918
Target:  5'- cGUGGCCUACGuguaccuGGCCuacuUUGAGgGg -3'
miRNA:   3'- -CAUCGGGUGCuu-----UCGGuau-AACUCgU- -5'
23570 3' -49.8 NC_005261.1 + 128329 0.68 0.977362
Target:  5'- -gGGCCUGCGggGGCUccga-GAGCGg -3'
miRNA:   3'- caUCGGGUGCuuUCGGuauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 127987 0.68 0.974705
Target:  5'- -aGGCCCGCGGcggcgagugcgcGGGCCcgccUGGGCAg -3'
miRNA:   3'- caUCGGGUGCU------------UUCGGuauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 127330 0.75 0.716607
Target:  5'- --cGCCCGCGggGGCCg----GAGCGg -3'
miRNA:   3'- cauCGGGUGCuuUCGGuauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 127215 0.68 0.974705
Target:  5'- -gGGCCCgGCGAcgAGGCCGUcgagGAGCc -3'
miRNA:   3'- caUCGGG-UGCU--UUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 124205 0.66 0.994771
Target:  5'- aUGGCCC-CGcuGGCCAUcgcaGAGCu -3'
miRNA:   3'- cAUCGGGuGCuuUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 122804 0.66 0.991813
Target:  5'- -cGGCCCGCGcccGGCCGacucUGGGCu -3'
miRNA:   3'- caUCGGGUGCuu-UCGGUaua-ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 122107 1.1 0.007334
Target:  5'- cGUAGCCCACGAAAGCCAUAUUGAGCAg -3'
miRNA:   3'- -CAUCGGGUGCUUUCGGUAUAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 121992 0.67 0.98205
Target:  5'- -cAGCUgGCGGAGGUCAUgGUUG-GCAu -3'
miRNA:   3'- caUCGGgUGCUUUCGGUA-UAACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 117687 0.68 0.968723
Target:  5'- -gGGCCCGCGGcgAGGCCGgcccUGAGg- -3'
miRNA:   3'- caUCGGGUGCU--UUCGGUaua-ACUCgu -5'
23570 3' -49.8 NC_005261.1 + 116545 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 115566 0.69 0.960674
Target:  5'- uGUGGCagcaCACGAAcgcggcgaggaacuGGCCGUAcgUGAGCc -3'
miRNA:   3'- -CAUCGg---GUGCUU--------------UCGGUAUa-ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 115128 0.7 0.939525
Target:  5'- cGgcGCCCACGAuggugucguacacGAGCCGgggGUcGGGCGc -3'
miRNA:   3'- -CauCGGGUGCU-------------UUCGGUa--UAaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 107138 0.68 0.968723
Target:  5'- cGgcGCCCACGGccgcGGCCAUGga-GGCGg -3'
miRNA:   3'- -CauCGGGUGCUu---UCGGUAUaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 105993 0.72 0.876337
Target:  5'- --cGCCCGCGAAGGCCAgcc---GCAg -3'
miRNA:   3'- cauCGGGUGCUUUCGGUauaacuCGU- -5'
23570 3' -49.8 NC_005261.1 + 101240 0.66 0.992918
Target:  5'- -cAGCCCGCGGGcuCCGgcugGAGCc -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 101019 0.74 0.798001
Target:  5'- -aAGCCCGCGGGAGCCAcagu-AGCGc -3'
miRNA:   3'- caUCGGGUGCUUUCGGUauaacUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.