miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 51233 0.68 0.974705
Target:  5'- uUGGCCUucgACGAGGGCCAcga-GGGCGc -3'
miRNA:   3'- cAUCGGG---UGCUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 28920 0.69 0.953874
Target:  5'- --cGCUCGCGGAGGCCA----GGGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 65453 0.69 0.961797
Target:  5'- -cGGCCCcggacgcgugcGCGGccGCCGUGcUGGGCAu -3'
miRNA:   3'- caUCGGG-----------UGCUuuCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 25934 0.69 0.965034
Target:  5'- -aAGCUCugGAAGgaaucccgaucccGCCGcgGUUGAGCAg -3'
miRNA:   3'- caUCGGGugCUUU-------------CGGUa-UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 15246 0.69 0.965382
Target:  5'- aGUGGCCCugcaGGAGGCCAcc--GAGCc -3'
miRNA:   3'- -CAUCGGGug--CUUUCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 25057 0.68 0.968723
Target:  5'- gGUGG-CCAUGAcGGCCAg---GAGCAg -3'
miRNA:   3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 7407 0.68 0.971828
Target:  5'- -gAGCgCACGguGGCCuggcccucgacGUAUUGGGCGu -3'
miRNA:   3'- caUCGgGUGCuuUCGG-----------UAUAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 60974 0.68 0.971828
Target:  5'- --cGCCCGCGAGcgcGCCcuuUUGAGCc -3'
miRNA:   3'- cauCGGGUGCUUu--CGGuauAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 36568 0.68 0.974705
Target:  5'- -cGGCCUACGAGGcGCagAUGcUGAGCAc -3'
miRNA:   3'- caUCGGGUGCUUU-CGg-UAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 27498 0.7 0.940028
Target:  5'- -cAGCCCgcugGCGAAGGUgGUuucGUUGAGCu -3'
miRNA:   3'- caUCGGG----UGCUUUCGgUA---UAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 65938 0.7 0.933812
Target:  5'- cGUGGCCCACGucgcgaaccucAGCCGgcugcUGGGCGa -3'
miRNA:   3'- -CAUCGGGUGCuu---------UCGGUaua--ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 35207 0.7 0.923752
Target:  5'- -cGGCCCGCgcguucuucGAGAGCCAcgcgGAGCGc -3'
miRNA:   3'- caUCGGGUG---------CUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 30892 0.74 0.798001
Target:  5'- -aGGUCCgcaacGCGGAGGCCGUGcUGGGCGa -3'
miRNA:   3'- caUCGGG-----UGCUUUCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 101019 0.74 0.798001
Target:  5'- -aAGCCCGCGGGAGCCAcagu-AGCGc -3'
miRNA:   3'- caUCGGGUGCUUUCGGUauaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 3766 0.73 0.834945
Target:  5'- --cGCCCACGAuggcGGCCAgGUaGAGCGc -3'
miRNA:   3'- cauCGGGUGCUu---UCGGUaUAaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 10014 0.73 0.843678
Target:  5'- -gGGCCCAauaaGAAAGCgGUgcgggggcgggGUUGAGCAa -3'
miRNA:   3'- caUCGGGUg---CUUUCGgUA-----------UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 81435 0.72 0.883896
Target:  5'- cGUGGCCCGCu---GCCGgaagUGGGCAa -3'
miRNA:   3'- -CAUCGGGUGcuuuCGGUaua-ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 135223 0.71 0.903691
Target:  5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5'
23570 3' -49.8 NC_005261.1 + 12524 0.71 0.905026
Target:  5'- -gAGCCCGCGgcGGCCGUcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 77304 0.71 0.905026
Target:  5'- -cGGCCCGCGGGucgccGCCGUGgaGGGCc -3'
miRNA:   3'- caUCGGGUGCUUu----CGGUAUaaCUCGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.