Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23570 | 3' | -49.8 | NC_005261.1 | + | 51233 | 0.68 | 0.974705 |
Target: 5'- uUGGCCUucgACGAGGGCCAcga-GGGCGc -3' miRNA: 3'- cAUCGGG---UGCUUUCGGUauaaCUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 28920 | 0.69 | 0.953874 |
Target: 5'- --cGCUCGCGGAGGCCA----GGGCGg -3' miRNA: 3'- cauCGGGUGCUUUCGGUauaaCUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 65453 | 0.69 | 0.961797 |
Target: 5'- -cGGCCCcggacgcgugcGCGGccGCCGUGcUGGGCAu -3' miRNA: 3'- caUCGGG-----------UGCUuuCGGUAUaACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 25934 | 0.69 | 0.965034 |
Target: 5'- -aAGCUCugGAAGgaaucccgaucccGCCGcgGUUGAGCAg -3' miRNA: 3'- caUCGGGugCUUU-------------CGGUa-UAACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 15246 | 0.69 | 0.965382 |
Target: 5'- aGUGGCCCugcaGGAGGCCAcc--GAGCc -3' miRNA: 3'- -CAUCGGGug--CUUUCGGUauaaCUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 25057 | 0.68 | 0.968723 |
Target: 5'- gGUGG-CCAUGAcGGCCAg---GAGCAg -3' miRNA: 3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 7407 | 0.68 | 0.971828 |
Target: 5'- -gAGCgCACGguGGCCuggcccucgacGUAUUGGGCGu -3' miRNA: 3'- caUCGgGUGCuuUCGG-----------UAUAACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 60974 | 0.68 | 0.971828 |
Target: 5'- --cGCCCGCGAGcgcGCCcuuUUGAGCc -3' miRNA: 3'- cauCGGGUGCUUu--CGGuauAACUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 36568 | 0.68 | 0.974705 |
Target: 5'- -cGGCCUACGAGGcGCagAUGcUGAGCAc -3' miRNA: 3'- caUCGGGUGCUUU-CGg-UAUaACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 27498 | 0.7 | 0.940028 |
Target: 5'- -cAGCCCgcugGCGAAGGUgGUuucGUUGAGCu -3' miRNA: 3'- caUCGGG----UGCUUUCGgUA---UAACUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 65938 | 0.7 | 0.933812 |
Target: 5'- cGUGGCCCACGucgcgaaccucAGCCGgcugcUGGGCGa -3' miRNA: 3'- -CAUCGGGUGCuu---------UCGGUaua--ACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 35207 | 0.7 | 0.923752 |
Target: 5'- -cGGCCCGCgcguucuucGAGAGCCAcgcgGAGCGc -3' miRNA: 3'- caUCGGGUG---------CUUUCGGUauaaCUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 30892 | 0.74 | 0.798001 |
Target: 5'- -aGGUCCgcaacGCGGAGGCCGUGcUGGGCGa -3' miRNA: 3'- caUCGGG-----UGCUUUCGGUAUaACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 101019 | 0.74 | 0.798001 |
Target: 5'- -aAGCCCGCGGGAGCCAcagu-AGCGc -3' miRNA: 3'- caUCGGGUGCUUUCGGUauaacUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 3766 | 0.73 | 0.834945 |
Target: 5'- --cGCCCACGAuggcGGCCAgGUaGAGCGc -3' miRNA: 3'- cauCGGGUGCUu---UCGGUaUAaCUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 10014 | 0.73 | 0.843678 |
Target: 5'- -gGGCCCAauaaGAAAGCgGUgcgggggcgggGUUGAGCAa -3' miRNA: 3'- caUCGGGUg---CUUUCGgUA-----------UAACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 81435 | 0.72 | 0.883896 |
Target: 5'- cGUGGCCCGCu---GCCGgaagUGGGCAa -3' miRNA: 3'- -CAUCGGGUGcuuuCGGUaua-ACUCGU- -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 135223 | 0.71 | 0.903691 |
Target: 5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3' miRNA: 3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 12524 | 0.71 | 0.905026 |
Target: 5'- -gAGCCCGCGgcGGCCGUcgccGGGCc -3' miRNA: 3'- caUCGGGUGCuuUCGGUAuaa-CUCGu -5' |
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23570 | 3' | -49.8 | NC_005261.1 | + | 77304 | 0.71 | 0.905026 |
Target: 5'- -cGGCCCGCGGGucgccGCCGUGgaGGGCc -3' miRNA: 3'- caUCGGGUGCUUu----CGGUAUaaCUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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