miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 122107 1.1 0.007334
Target:  5'- cGUAGCCCACGAAAGCCAUAUUGAGCAg -3'
miRNA:   3'- -CAUCGGGUGCUUUCGGUAUAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 54387 0.76 0.694132
Target:  5'- gGgcGCCCGCGAAGGCCGUgccgguuaaggaaGUcgagGAGCAu -3'
miRNA:   3'- -CauCGGGUGCUUUCGGUA-------------UAa---CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 127330 0.75 0.716607
Target:  5'- --cGCCCGCGggGGCCg----GAGCGg -3'
miRNA:   3'- cauCGGGUGCuuUCGGuauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 91291 0.75 0.727187
Target:  5'- cUGGCCCGCG--GGCCGcg-UGAGCAc -3'
miRNA:   3'- cAUCGGGUGCuuUCGGUauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 67355 0.75 0.737674
Target:  5'- -gGGCCCGCGAAGGCCGccg-GcAGCGc -3'
miRNA:   3'- caUCGGGUGCUUUCGGUauaaC-UCGU- -5'
23570 3' -49.8 NC_005261.1 + 30892 0.74 0.798001
Target:  5'- -aGGUCCgcaacGCGGAGGCCGUGcUGGGCGa -3'
miRNA:   3'- caUCGGG-----UGCUUUCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 101019 0.74 0.798001
Target:  5'- -aAGCCCGCGGGAGCCAcagu-AGCGc -3'
miRNA:   3'- caUCGGGUGCUUUCGGUauaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 3766 0.73 0.834945
Target:  5'- --cGCCCACGAuggcGGCCAgGUaGAGCGc -3'
miRNA:   3'- cauCGGGUGCUu---UCGGUaUAaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 10014 0.73 0.843678
Target:  5'- -gGGCCCAauaaGAAAGCgGUgcgggggcgggGUUGAGCAa -3'
miRNA:   3'- caUCGGGUg---CUUUCGgUA-----------UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 86999 0.73 0.843678
Target:  5'- cGUGGCCCucguCGAAGGCCAag-UGcGCGg -3'
miRNA:   3'- -CAUCGGGu---GCUUUCGGUauaACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 56391 0.72 0.876337
Target:  5'- -gAGCUCGCGggGGCCc---UGGGCGc -3'
miRNA:   3'- caUCGGGUGCuuUCGGuauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 105993 0.72 0.876337
Target:  5'- --cGCCCGCGAAGGCCAgcc---GCAg -3'
miRNA:   3'- cauCGGGUGCUUUCGGUauaacuCGU- -5'
23570 3' -49.8 NC_005261.1 + 81435 0.72 0.883896
Target:  5'- cGUGGCCCGCu---GCCGgaagUGGGCAa -3'
miRNA:   3'- -CAUCGGGUGcuuuCGGUaua-ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 66335 0.71 0.891201
Target:  5'- -cAGCCCACGAGgucugcgaucuuGGCCAgcgcGAGCu -3'
miRNA:   3'- caUCGGGUGCUU------------UCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 19536 0.71 0.902345
Target:  5'- -cGGCCCGCGucaccgccagcGCCGUGggGAGCGc -3'
miRNA:   3'- caUCGGGUGCuuu--------CGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 135223 0.71 0.903691
Target:  5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5'
23570 3' -49.8 NC_005261.1 + 30706 0.71 0.903691
Target:  5'- -aGGCCCGCGGGAGCCccggcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCUUUCGGuauaa---CUCGu -5'
23570 3' -49.8 NC_005261.1 + 12524 0.71 0.905026
Target:  5'- -gAGCCCGCGgcGGCCGUcgccGGGCc -3'
miRNA:   3'- caUCGGGUGCuuUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 77304 0.71 0.905026
Target:  5'- -cGGCCCGCGGGucgccGCCGUGgaGGGCc -3'
miRNA:   3'- caUCGGGUGCUUu----CGGUAUaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 61573 0.71 0.917781
Target:  5'- gGUGGCgCugGugauGGCCGUGUucgUGGGCAg -3'
miRNA:   3'- -CAUCGgGugCuu--UCGGUAUA---ACUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.