miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 99010 0.67 0.98205
Target:  5'- cGgcGCgCGCGAGGGCCAUGgc-GGCu -3'
miRNA:   3'- -CauCGgGUGCUUUCGGUAUaacUCGu -5'
23570 3' -49.8 NC_005261.1 + 98364 0.67 0.985969
Target:  5'- -cGGCCUGCu--GGCCGUGUgccUGGGCGc -3'
miRNA:   3'- caUCGGGUGcuuUCGGUAUA---ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 96028 0.67 0.987664
Target:  5'- gGgcGCCCGCGcgGcGCCGUG--GAGCGg -3'
miRNA:   3'- -CauCGGGUGCuuU-CGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 94470 0.67 0.984101
Target:  5'- --cGcCCCACGAGcaccuucaggGGCacgGUGUUGAGCAg -3'
miRNA:   3'- cauC-GGGUGCUU----------UCGg--UAUAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 91291 0.75 0.727187
Target:  5'- cUGGCCCGCG--GGCCGcg-UGAGCAc -3'
miRNA:   3'- cAUCGGGUGCuuUCGGUauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 86999 0.73 0.843678
Target:  5'- cGUGGCCCucguCGAAGGCCAag-UGcGCGg -3'
miRNA:   3'- -CAUCGGGu---GCUUUCGGUauaACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 83351 0.66 0.993808
Target:  5'- cGUGGCCCGCaGGAAGgCGUccacgucGgcGAGCGc -3'
miRNA:   3'- -CAUCGGGUG-CUUUCgGUA-------UaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 81435 0.72 0.883896
Target:  5'- cGUGGCCCGCu---GCCGgaagUGGGCAa -3'
miRNA:   3'- -CAUCGGGUGcuuuCGGUaua-ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 79958 0.66 0.990576
Target:  5'- cGUGGUCCugGAuguGGUCGUAggUGAacuGCAg -3'
miRNA:   3'- -CAUCGGGugCUu--UCGGUAUa-ACU---CGU- -5'
23570 3' -49.8 NC_005261.1 + 79309 0.68 0.977362
Target:  5'- -gAGCCCGCGcaugauGGCCAUGUUGccGUc -3'
miRNA:   3'- caUCGGGUGCuu----UCGGUAUAACu-CGu -5'
23570 3' -49.8 NC_005261.1 + 77304 0.71 0.905026
Target:  5'- -cGGCCCGCGGGucgccGCCGUGgaGGGCc -3'
miRNA:   3'- caUCGGGUGCUUu----CGGUAUaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 76650 0.67 0.984101
Target:  5'- --uGCCCACGAAcacGGCCAUcaccAGCGc -3'
miRNA:   3'- cauCGGGUGCUU---UCGGUAuaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 76056 0.68 0.977362
Target:  5'- cGUGGCCgGCGGgcGCCAcca-GGGCGg -3'
miRNA:   3'- -CAUCGGgUGCUuuCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 74904 0.66 0.992918
Target:  5'- -cGGCCCGCGcuGGCCGcgcgggGgaGGGCGa -3'
miRNA:   3'- caUCGGGUGCuuUCGGUa-----UaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 73854 0.66 0.993901
Target:  5'- cGgcGCCC-CGGAGGCUuuuaagcggGUcgUGGGCGu -3'
miRNA:   3'- -CauCGGGuGCUUUCGG---------UAuaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 73823 0.68 0.977362
Target:  5'- --cGCCCGCGccuAGCCcgGcucUUGGGCGa -3'
miRNA:   3'- cauCGGGUGCuu-UCGGuaU---AACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 71437 0.66 0.994436
Target:  5'- -gGGCCCGCGGcgcgcAGCCGccgccucccgGAGCAu -3'
miRNA:   3'- caUCGGGUGCUu----UCGGUauaa------CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 70881 0.66 0.994771
Target:  5'- cGUGGCCgGCGGugcacauGGCCGUGcacUUGcGCGc -3'
miRNA:   3'- -CAUCGGgUGCUu------UCGGUAU---AACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 70705 0.67 0.987664
Target:  5'- -cGGCCCGCGcgGGCaCGgccgaGAGCAc -3'
miRNA:   3'- caUCGGGUGCuuUCG-GUauaa-CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 67355 0.75 0.737674
Target:  5'- -gGGCCCGCGAAGGCCGccg-GcAGCGc -3'
miRNA:   3'- caUCGGGUGCUUUCGGUauaaC-UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.