miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 45942 0.69 0.957963
Target:  5'- --cGCgCGCGAGGGCCGccagggcgccGUUGAGCAu -3'
miRNA:   3'- cauCGgGUGCUUUCGGUa---------UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 46701 0.66 0.994771
Target:  5'- cGUAGCCCGgGuccucGGCCAUGUccGAGa- -3'
miRNA:   3'- -CAUCGGGUgCuu---UCGGUAUAa-CUCgu -5'
23570 3' -49.8 NC_005261.1 + 46756 0.69 0.965382
Target:  5'- -cAGCCCGCcgaaGAAGGUCAg---GAGCGa -3'
miRNA:   3'- caUCGGGUG----CUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 47577 0.68 0.974705
Target:  5'- gGUGG-CCGCGAcGGCCAggcaGGGCAg -3'
miRNA:   3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 49809 0.66 0.991813
Target:  5'- gGUGGCCCGCGAAGuCCAagaUGUcGuGCu -3'
miRNA:   3'- -CAUCGGGUGCUUUcGGU---AUAaCuCGu -5'
23570 3' -49.8 NC_005261.1 + 51233 0.68 0.974705
Target:  5'- uUGGCCUucgACGAGGGCCAcga-GGGCGc -3'
miRNA:   3'- cAUCGGG---UGCUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 54387 0.76 0.694132
Target:  5'- gGgcGCCCGCGAAGGCCGUgccgguuaaggaaGUcgagGAGCAu -3'
miRNA:   3'- -CauCGGGUGCUUUCGGUA-------------UAa---CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 56391 0.72 0.876337
Target:  5'- -gAGCUCGCGggGGCCc---UGGGCGc -3'
miRNA:   3'- caUCGGGUGCuuUCGGuauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 57803 0.7 0.940028
Target:  5'- -gGGCgCGCGAAGGCCGUGaa-GGCGa -3'
miRNA:   3'- caUCGgGUGCUUUCGGUAUaacUCGU- -5'
23570 3' -49.8 NC_005261.1 + 60147 0.68 0.974705
Target:  5'- -gGGCCggCGCGggGGCCAgcgccUGGGCc -3'
miRNA:   3'- caUCGG--GUGCuuUCGGUaua--ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 60188 0.67 0.987664
Target:  5'- -gGGCCCGCGAccaccGGCUGgggcgGAGCGg -3'
miRNA:   3'- caUCGGGUGCUu----UCGGUauaa-CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 60974 0.68 0.971828
Target:  5'- --cGCCCGCGAGcgcGCCcuuUUGAGCc -3'
miRNA:   3'- cauCGGGUGCUUu--CGGuauAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 61573 0.71 0.917781
Target:  5'- gGUGGCgCugGugauGGCCGUGUucgUGGGCAg -3'
miRNA:   3'- -CAUCGgGugCuu--UCGGUAUA---ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 62421 0.68 0.979807
Target:  5'- --cGCCCGCcGAGGCCAgcgcGAGCc -3'
miRNA:   3'- cauCGGGUGcUUUCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 62890 0.68 0.979807
Target:  5'- -cAGCCCGCGcGAGGCgGggcgGGGCGg -3'
miRNA:   3'- caUCGGGUGC-UUUCGgUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 63464 0.66 0.993901
Target:  5'- --cGCCCGCGAGGGUugCAcGgcGAGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCG--GUaUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 63768 0.7 0.946788
Target:  5'- uGUAGCCCACGccGAGGuCCAcGUgcgcgcgcggcugcgUGAGCGu -3'
miRNA:   3'- -CAUCGGGUGC--UUUC-GGUaUA---------------ACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 64365 0.67 0.987664
Target:  5'- --cGCCCACGAcccgcuuaaAAGCCuccg-GGGCGc -3'
miRNA:   3'- cauCGGGUGCU---------UUCGGuauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 65453 0.69 0.961797
Target:  5'- -cGGCCCcggacgcgugcGCGGccGCCGUGcUGGGCAu -3'
miRNA:   3'- caUCGGG-----------UGCUuuCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 65938 0.7 0.933812
Target:  5'- cGUGGCCCACGucgcgaaccucAGCCGgcugcUGGGCGa -3'
miRNA:   3'- -CAUCGGGUGCuu---------UCGGUaua--ACUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.