miRNA display CGI


Results 41 - 60 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 65453 0.69 0.961797
Target:  5'- -cGGCCCcggacgcgugcGCGGccGCCGUGcUGGGCAu -3'
miRNA:   3'- caUCGGG-----------UGCUuuCGGUAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 15246 0.69 0.965382
Target:  5'- aGUGGCCCugcaGGAGGCCAcc--GAGCc -3'
miRNA:   3'- -CAUCGGGug--CUUUCGGUauaaCUCGu -5'
23570 3' -49.8 NC_005261.1 + 331 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 116545 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 127215 0.68 0.974705
Target:  5'- -gGGCCCgGCGAcgAGGCCGUcgagGAGCc -3'
miRNA:   3'- caUCGGG-UGCU--UUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 47577 0.68 0.974705
Target:  5'- gGUGG-CCGCGAcGGCCAggcaGGGCAg -3'
miRNA:   3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 127987 0.68 0.974705
Target:  5'- -aGGCCCGCGGcggcgagugcgcGGGCCcgccUGGGCAg -3'
miRNA:   3'- caUCGGGUGCU------------UUCGGuauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 60147 0.68 0.974705
Target:  5'- -gGGCCggCGCGggGGCCAgcgccUGGGCc -3'
miRNA:   3'- caUCGG--GUGCuuUCGGUaua--ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 51233 0.68 0.974705
Target:  5'- uUGGCCUucgACGAGGGCCAcga-GGGCGc -3'
miRNA:   3'- cAUCGGG---UGCUUUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 36568 0.68 0.974705
Target:  5'- -cGGCCUACGAGGcGCagAUGcUGAGCAc -3'
miRNA:   3'- caUCGGGUGCUUU-CGg-UAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 60974 0.68 0.971828
Target:  5'- --cGCCCGCGAGcgcGCCcuuUUGAGCc -3'
miRNA:   3'- cauCGGGUGCUUu--CGGuauAACUCGu -5'
23570 3' -49.8 NC_005261.1 + 7407 0.68 0.971828
Target:  5'- -gAGCgCACGguGGCCuggcccucgacGUAUUGGGCGu -3'
miRNA:   3'- caUCGgGUGCuuUCGG-----------UAUAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 25057 0.68 0.968723
Target:  5'- gGUGG-CCAUGAcGGCCAg---GAGCAg -3'
miRNA:   3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 25934 0.69 0.965034
Target:  5'- -aAGCUCugGAAGgaaucccgaucccGCCGcgGUUGAGCAg -3'
miRNA:   3'- caUCGGGugCUUU-------------CGGUa-UAACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 70881 0.66 0.994771
Target:  5'- cGUGGCCgGCGGugcacauGGCCGUGcacUUGcGCGc -3'
miRNA:   3'- -CAUCGGgUGCUu------UCGGUAU---AACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 40239 0.66 0.994771
Target:  5'- cUGGCCC--GggGGCCG---UGAGCGc -3'
miRNA:   3'- cAUCGGGugCuuUCGGUauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 71437 0.66 0.994436
Target:  5'- -gGGCCCGCGGcgcgcAGCCGccgccucccgGAGCAu -3'
miRNA:   3'- caUCGGGUGCUu----UCGGUauaa------CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 73854 0.66 0.993901
Target:  5'- cGgcGCCC-CGGAGGCUuuuaagcggGUcgUGGGCGu -3'
miRNA:   3'- -CauCGGGuGCUUUCGG---------UAuaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 63464 0.66 0.993901
Target:  5'- --cGCCCGCGAGGGUugCAcGgcGAGCGg -3'
miRNA:   3'- cauCGGGUGCUUUCG--GUaUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 34289 0.66 0.993901
Target:  5'- -cGGCCgGCGggGacGCCGg---GAGCGa -3'
miRNA:   3'- caUCGGgUGCuuU--CGGUauaaCUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.