miRNA display CGI


Results 81 - 100 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 3013 0.66 0.462834
Target:  5'- aCGCGCUCgGccguggcccucuGCGCCGCCuCGGCcauGCu -3'
miRNA:   3'- -GCGCGAGgU------------CGCGGCGG-GUCGac-CGc -5'
23571 3' -65.2 NC_005261.1 + 64579 0.66 0.462834
Target:  5'- aCGCGgUCgUAGUGCaCGCCCAuGCUGcaGCa -3'
miRNA:   3'- -GCGCgAG-GUCGCG-GCGGGU-CGAC--CGc -5'
23571 3' -65.2 NC_005261.1 + 64063 0.66 0.462834
Target:  5'- uGCGCcaCCGGCuGCCGCaCGG-UGGCGu -3'
miRNA:   3'- gCGCGa-GGUCG-CGGCGgGUCgACCGC- -5'
23571 3' -65.2 NC_005261.1 + 4501 0.66 0.462834
Target:  5'- gGCGUugUCC-GCGCCGcCCCAGaCguagacGGCGc -3'
miRNA:   3'- gCGCG--AGGuCGCGGC-GGGUC-Ga-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 100992 0.66 0.462834
Target:  5'- cCGCGCugUCCAcGCGCCGCgCCGcGCaaGCc -3'
miRNA:   3'- -GCGCG--AGGU-CGCGGCG-GGU-CGacCGc -5'
23571 3' -65.2 NC_005261.1 + 56416 0.66 0.462834
Target:  5'- uGCGCUUCgcGGCGCaccCGCCUGcGgaGGCGg -3'
miRNA:   3'- gCGCGAGG--UCGCG---GCGGGU-CgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 52565 0.66 0.462834
Target:  5'- gCGCGCaguUCCAGC-CCGUgCuGC-GGCGg -3'
miRNA:   3'- -GCGCG---AGGUCGcGGCGgGuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 98555 0.66 0.462834
Target:  5'- cCGCGaaaUCCGGCgggcgGCCGUCCuccgcgGGCUcgGGCGa -3'
miRNA:   3'- -GCGCg--AGGUCG-----CGGCGGG------UCGA--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 75225 0.66 0.462834
Target:  5'- cCGCGCgggCgCGGcCGCCGagggCCGGCUGGa- -3'
miRNA:   3'- -GCGCGa--G-GUC-GCGGCg---GGUCGACCgc -5'
23571 3' -65.2 NC_005261.1 + 99234 0.66 0.462834
Target:  5'- gGCGCgUCGGCGUCGCgCCcGCcgGGCc -3'
miRNA:   3'- gCGCGaGGUCGCGGCG-GGuCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 97169 0.66 0.462834
Target:  5'- gGCGgaCC-GCGCCGCCggcucugaGGCcGGCGc -3'
miRNA:   3'- gCGCgaGGuCGCGGCGGg-------UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 86331 0.66 0.462834
Target:  5'- gCGCGC-CCGggcgauguagcGCGCCGCCU-GCUGccGCGc -3'
miRNA:   3'- -GCGCGaGGU-----------CGCGGCGGGuCGAC--CGC- -5'
23571 3' -65.2 NC_005261.1 + 66878 0.66 0.462834
Target:  5'- uCGCGCUCuCGGCGCucaccgaggacgCGCUCgcGGCcGGCu -3'
miRNA:   3'- -GCGCGAG-GUCGCG------------GCGGG--UCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 105696 0.66 0.462834
Target:  5'- cCGCGCcgcggCCGGgGCCgggGCCgGGCgcGGCGc -3'
miRNA:   3'- -GCGCGa----GGUCgCGG---CGGgUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 120498 0.66 0.462834
Target:  5'- cCGCccGCUCCgAGCGCCGCUCcGauucccgGGCa -3'
miRNA:   3'- -GCG--CGAGG-UCGCGGCGGGuCga-----CCGc -5'
23571 3' -65.2 NC_005261.1 + 103095 0.66 0.462834
Target:  5'- cCGgGC-CCAGC-CCGgCCAGCgcccccGGCGc -3'
miRNA:   3'- -GCgCGaGGUCGcGGCgGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 124046 0.66 0.462834
Target:  5'- aGUGCgCUAGCGCCaGCagguaCAGCUcGGCc -3'
miRNA:   3'- gCGCGaGGUCGCGG-CGg----GUCGA-CCGc -5'
23571 3' -65.2 NC_005261.1 + 43601 0.66 0.462834
Target:  5'- gCGCGCgccgacgaCGGCGCCGgCggCGGCgagGGCGc -3'
miRNA:   3'- -GCGCGag------GUCGCGGCgG--GUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 74115 0.66 0.462834
Target:  5'- cCGCGCggCAcGUGCCGCCCGuGCcgcacuuugugGGCGc -3'
miRNA:   3'- -GCGCGagGU-CGCGGCGGGU-CGa----------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 117051 0.66 0.462834
Target:  5'- cCGCGCUcgcgCCAGCGgcugcaucuCUGCUCGGCagGGCc -3'
miRNA:   3'- -GCGCGA----GGUCGC---------GGCGGGUCGa-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.