miRNA display CGI


Results 61 - 80 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 81788 0.66 0.471723
Target:  5'- aCGCGUUgCGguGCGCCGCCgCcuccGCaGGCGg -3'
miRNA:   3'- -GCGCGAgGU--CGCGGCGG-Gu---CGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 94859 0.66 0.471723
Target:  5'- cCGCGaggCCGaUGCCGCCgCAGC-GGCa -3'
miRNA:   3'- -GCGCga-GGUcGCGGCGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 44767 0.66 0.471723
Target:  5'- gCGCGCcCCGGCaCCGCgCuggggccgguGCUGGCc -3'
miRNA:   3'- -GCGCGaGGUCGcGGCGgGu---------CGACCGc -5'
23571 3' -65.2 NC_005261.1 + 136097 0.66 0.471723
Target:  5'- gGCGCgCCGGacgugaGCgCGCUCGGCgcgcagGGCGu -3'
miRNA:   3'- gCGCGaGGUCg-----CG-GCGGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 11138 0.66 0.471723
Target:  5'- cCGCGC-CCAGCcgucauugcgGCgGCgCGGC-GGCGg -3'
miRNA:   3'- -GCGCGaGGUCG----------CGgCGgGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 62577 0.66 0.471723
Target:  5'- gCGCGCgcgCCAggaacGCGCCGgCCGcGC-GGUGg -3'
miRNA:   3'- -GCGCGa--GGU-----CGCGGCgGGU-CGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 68985 0.66 0.471723
Target:  5'- gGCGCgggCCAGCGCCucggcgaaccGcCCCAGC-GcGCa -3'
miRNA:   3'- gCGCGa--GGUCGCGG----------C-GGGUCGaC-CGc -5'
23571 3' -65.2 NC_005261.1 + 133309 0.66 0.470831
Target:  5'- gGCGCUCgCGGCcgcggcggaggcaGCCGCCgccgaAGCcgaGGCGg -3'
miRNA:   3'- gCGCGAG-GUCG-------------CGGCGGg----UCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 61150 0.66 0.470831
Target:  5'- aGCGUccgcgCCAGCGCCucgcgcgGCaCCGGCcaGGCGc -3'
miRNA:   3'- gCGCGa----GGUCGCGG-------CG-GGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 28792 0.66 0.470831
Target:  5'- gGCGCUCgCGGCcgcggcggaggcaGCCGCCgccgaAGCcgaGGCGg -3'
miRNA:   3'- gCGCGAG-GUCG-------------CGGCGGg----UCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 103380 0.66 0.469048
Target:  5'- cCGCGCgCCGccGCGCCGCggccgccugcgccuCCAGCUccGcGCGg -3'
miRNA:   3'- -GCGCGaGGU--CGCGGCG--------------GGUCGA--C-CGC- -5'
23571 3' -65.2 NC_005261.1 + 132378 0.66 0.469048
Target:  5'- cCGCGCUCgCGGCGCUGuucCCCGaggccgccgccgacGcCUGGCc -3'
miRNA:   3'- -GCGCGAG-GUCGCGGC---GGGU--------------C-GACCGc -5'
23571 3' -65.2 NC_005261.1 + 17114 0.66 0.469048
Target:  5'- cCGCGcCUCC-GCGCCcuagaggaCCCGcacggccuggaggcGCUGGCGg -3'
miRNA:   3'- -GCGC-GAGGuCGCGGc-------GGGU--------------CGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 14240 0.66 0.466379
Target:  5'- cCGCGCcggCCGGgGCCuuuGCCCcggugucggcuucggGGCUGGgGc -3'
miRNA:   3'- -GCGCGa--GGUCgCGG---CGGG---------------UCGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 91668 0.66 0.466379
Target:  5'- cCGCGCUCgcagCAGCGCuCGCgcugcgggacgacugCCAGCgcgcagcggaGGCGg -3'
miRNA:   3'- -GCGCGAG----GUCGCG-GCG---------------GGUCGa---------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 26398 0.66 0.466379
Target:  5'- aCGCGCUCCgcgaccucagggagaAGCGCgaGCUCGGCcgacGCGa -3'
miRNA:   3'- -GCGCGAGG---------------UCGCGg-CGGGUCGac--CGC- -5'
23571 3' -65.2 NC_005261.1 + 64999 0.66 0.466379
Target:  5'- gGUGCUCCAGgagguccuuguagacCGCCGUgCAGUccucgGGCa -3'
miRNA:   3'- gCGCGAGGUC---------------GCGGCGgGUCGa----CCGc -5'
23571 3' -65.2 NC_005261.1 + 45431 0.66 0.466379
Target:  5'- cCGCGCgcgCCGGCGaCCggaccccgaccccgaGCCCGgGCUcGGCc -3'
miRNA:   3'- -GCGCGa--GGUCGC-GG---------------CGGGU-CGA-CCGc -5'
23571 3' -65.2 NC_005261.1 + 105696 0.66 0.462834
Target:  5'- cCGCGCcgcggCCGGgGCCgggGCCgGGCgcGGCGc -3'
miRNA:   3'- -GCGCGa----GGUCgCGG---CGGgUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 117051 0.66 0.462834
Target:  5'- cCGCGCUcgcgCCAGCGgcugcaucuCUGCUCGGCagGGCc -3'
miRNA:   3'- -GCGCGA----GGUCGC---------GGCGGGUCGa-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.