miRNA display CGI


Results 61 - 80 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 44380 0.77 0.090126
Target:  5'- gCGCGcCUCguggacugcucggCGGCGCCGCCCGGCggcugcGGCGg -3'
miRNA:   3'- -GCGC-GAG-------------GUCGCGGCGGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 42468 0.77 0.092664
Target:  5'- gCGCGCgaggcucCCGGCGCC-CCCGGCggcGGCGg -3'
miRNA:   3'- -GCGCGa------GGUCGCGGcGGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 56062 0.75 0.119042
Target:  5'- cCGCGCcuUCC-GCGCCGCgCUuGCUGGCGc -3'
miRNA:   3'- -GCGCG--AGGuCGCGGCG-GGuCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 60495 0.75 0.122036
Target:  5'- gGgGCUCCcaguuguaccGGCGCCGCUUGGCUGGgGg -3'
miRNA:   3'- gCgCGAGG----------UCGCGGCGGGUCGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 16593 0.75 0.122036
Target:  5'- cCGCGCUCgccggCGGCgGCCGCCgAGC-GGCGg -3'
miRNA:   3'- -GCGCGAG-----GUCG-CGGCGGgUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 58847 0.75 0.128233
Target:  5'- aGCGagaUCCAGCGCCGCaaCCAGCUG-Ca -3'
miRNA:   3'- gCGCg--AGGUCGCGGCG--GGUCGACcGc -5'
23571 3' -65.2 NC_005261.1 + 85258 0.75 0.128233
Target:  5'- cCGC-CUgCCGGCGCCGCaCCGGCgcGGCGc -3'
miRNA:   3'- -GCGcGA-GGUCGCGGCG-GGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 66268 0.75 0.131439
Target:  5'- gCGCGCUCCGcgccccGCGCCGaCgCCAGUggGGCGc -3'
miRNA:   3'- -GCGCGAGGU------CGCGGC-G-GGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 10531 0.75 0.131439
Target:  5'- aCGCGCagcuccUCCGGCGCCGCCggggCAGC-GGCc -3'
miRNA:   3'- -GCGCG------AGGUCGCGGCGG----GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 80201 0.75 0.131439
Target:  5'- cCGCGCUCCcuggAGCuGCCGCCgCGGCacuuccacguccUGGCGc -3'
miRNA:   3'- -GCGCGAGG----UCG-CGGCGG-GUCG------------ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 99957 0.75 0.116118
Target:  5'- cCGCGUgcaCCAGcCGCCcccaGCCCAgGCUGGCGu -3'
miRNA:   3'- -GCGCGa--GGUC-GCGG----CGGGU-CGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 64866 0.75 0.116118
Target:  5'- cCGCGUgCUGGCGCCGCCUgAGCcGGCGc -3'
miRNA:   3'- -GCGCGaGGUCGCGGCGGG-UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 134382 0.76 0.09503
Target:  5'- cCGCGCggcgCCGGCGCCGCugccgCCAGCgcccgGGCc -3'
miRNA:   3'- -GCGCGa---GGUCGCGGCG-----GGUCGa----CCGc -5'
23571 3' -65.2 NC_005261.1 + 15326 0.76 0.097453
Target:  5'- uGCGCUCCAaCGCCGUCCcGgaGGCGc -3'
miRNA:   3'- gCGCGAGGUcGCGGCGGGuCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 69122 0.76 0.099935
Target:  5'- gGUGCUCUAGCGCC-CCguagCAGCUGGCc -3'
miRNA:   3'- gCGCGAGGUCGCGGcGG----GUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 49754 0.76 0.105078
Target:  5'- gCGCGCUCCGGCGCggcacggccCGCCCAcacGCUcacgcGGCGc -3'
miRNA:   3'- -GCGCGAGGUCGCG---------GCGGGU---CGA-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 73554 0.76 0.105078
Target:  5'- aCGCGC-CCGGUGCCGCaCCacggcgacgaguGGCUGGUGc -3'
miRNA:   3'- -GCGCGaGGUCGCGGCG-GG------------UCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 60891 0.76 0.107741
Target:  5'- uGCGCUCauggcggggggCGGCGCCGgcggaagcUCCGGCUGGCGu -3'
miRNA:   3'- gCGCGAG-----------GUCGCGGC--------GGGUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 6542 0.76 0.107741
Target:  5'- gGCGgUCCAGCGCCGCgC-GCagGGCGg -3'
miRNA:   3'- gCGCgAGGUCGCGGCGgGuCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 68264 0.76 0.110469
Target:  5'- gGCGUUCUAGCGCgCGCCCGGa-GGCc -3'
miRNA:   3'- gCGCGAGGUCGCG-GCGGGUCgaCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.