miRNA display CGI


Results 61 - 80 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 10208 0.7 0.262046
Target:  5'- gCGUGCUCCcagggcccGCGCCuGCCCAGgCgGGCc -3'
miRNA:   3'- -GCGCGAGGu-------CGCGG-CGGGUC-GaCCGc -5'
23571 3' -65.2 NC_005261.1 + 10257 0.66 0.445324
Target:  5'- cCGCGggCCuGGCGCCuucuGCCCugaGGaCUGGCGc -3'
miRNA:   3'- -GCGCgaGG-UCGCGG----CGGG---UC-GACCGC- -5'
23571 3' -65.2 NC_005261.1 + 10531 0.75 0.131439
Target:  5'- aCGCGCagcuccUCCGGCGCCGCCggggCAGC-GGCc -3'
miRNA:   3'- -GCGCG------AGGUCGCGGCGG----GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 10587 0.73 0.180343
Target:  5'- cCGCGCgccccCCGGCGCCGCcgccgucgcguCCGGCcGGCc -3'
miRNA:   3'- -GCGCGa----GGUCGCGGCG-----------GGUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 10887 0.67 0.379227
Target:  5'- gCGgGC-CCAGCGCCccgccgcuccgGCCCccGCgGGCGg -3'
miRNA:   3'- -GCgCGaGGUCGCGG-----------CGGGu-CGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 11049 0.69 0.286698
Target:  5'- gGCaCUCgGGCGCCGCCCA---GGCGc -3'
miRNA:   3'- gCGcGAGgUCGCGGCGGGUcgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 11138 0.66 0.471723
Target:  5'- cCGCGC-CCAGCcgucauugcgGCgGCgCGGC-GGCGg -3'
miRNA:   3'- -GCGCGaGGUCG----------CGgCGgGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 11289 0.68 0.334159
Target:  5'- cCGCGC-CCGGCGCC-CCUGGCcGcGCu -3'
miRNA:   3'- -GCGCGaGGUCGCGGcGGGUCGaC-CGc -5'
23571 3' -65.2 NC_005261.1 + 11724 0.69 0.32704
Target:  5'- gGCGC-CCAGgcaGaCCGCCugcggCAGCUGGUGg -3'
miRNA:   3'- gCGCGaGGUCg--C-GGCGG-----GUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 11898 0.72 0.203113
Target:  5'- aCGCGCgcccgCCGcGgGCCcgGCCCGGCcGGCGg -3'
miRNA:   3'- -GCGCGa----GGU-CgCGG--CGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 11967 0.69 0.306361
Target:  5'- gCGCGCUCCAGCGCagcaGCCgcgugucgauCGGCUcgaaGCa -3'
miRNA:   3'- -GCGCGAGGUCGCGg---CGG----------GUCGAc---CGc -5'
23571 3' -65.2 NC_005261.1 + 12111 0.67 0.387124
Target:  5'- gCGCcaGCUCUAGCGCCaggauggcGCCCGccGCcgcGGCGg -3'
miRNA:   3'- -GCG--CGAGGUCGCGG--------CGGGU--CGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 12201 0.67 0.419772
Target:  5'- aGCGCcgccgCCGGUGCCGCCgCcGCUGcuGCc -3'
miRNA:   3'- gCGCGa----GGUCGCGGCGG-GuCGAC--CGc -5'
23571 3' -65.2 NC_005261.1 + 12332 0.7 0.262046
Target:  5'- gCGCGCUuggCCGGCgcggccGCCGCCgCGGC-GGCa -3'
miRNA:   3'- -GCGCGA---GGUCG------CGGCGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 12349 0.66 0.44273
Target:  5'- gGCGCcuucagCCaagGGCGCCGcCCCGGCcgaguuugccgccuUGGCu -3'
miRNA:   3'- gCGCGa-----GG---UCGCGGC-GGGUCG--------------ACCGc -5'
23571 3' -65.2 NC_005261.1 + 12643 0.67 0.395128
Target:  5'- gCGCGgUCUGGgGCCGCgCCGGC--GCGa -3'
miRNA:   3'- -GCGCgAGGUCgCGGCG-GGUCGacCGC- -5'
23571 3' -65.2 NC_005261.1 + 12691 0.79 0.05857
Target:  5'- gGC-CUCUGGCGCCGCCCuGCgGGCGg -3'
miRNA:   3'- gCGcGAGGUCGCGGCGGGuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 12862 0.69 0.286698
Target:  5'- -cCGUUCCAGCGCCccucuGCCCGGCgGaGCc -3'
miRNA:   3'- gcGCGAGGUCGCGG-----CGGGUCGaC-CGc -5'
23571 3' -65.2 NC_005261.1 + 13046 0.67 0.403239
Target:  5'- gGCGCggggCC-GCGCgCGCCCcuGCcgGGCGc -3'
miRNA:   3'- gCGCGa---GGuCGCG-GCGGGu-CGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 13281 0.71 0.223088
Target:  5'- gCGgGCUCCagGGCGCCGgCaCAGCgcgcgcGGCGg -3'
miRNA:   3'- -GCgCGAGG--UCGCGGCgG-GUCGa-----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.