miRNA display CGI


Results 41 - 60 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 4887 0.69 0.289261
Target:  5'- uGCGCggCAGCGCCGCgCgcgcgugccggcaggAGCUGcGCGa -3'
miRNA:   3'- gCGCGagGUCGCGGCGgG---------------UCGAC-CGC- -5'
23571 3' -65.2 NC_005261.1 + 4945 0.69 0.306361
Target:  5'- cCGCGCcgcggCCcaGGCGCC-CCCGGCcgcGGCGu -3'
miRNA:   3'- -GCGCGa----GG--UCGCGGcGGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 5102 0.67 0.419772
Target:  5'- uGCGC-CaCAGCuccGCCaGCUCGGCgcgGGCGg -3'
miRNA:   3'- gCGCGaG-GUCG---CGG-CGGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 5141 0.73 0.180343
Target:  5'- gGCGCUCgC-GCGCCucgGCCCGGCgGGCc -3'
miRNA:   3'- gCGCGAG-GuCGCGG---CGGGUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 5326 0.72 0.193719
Target:  5'- cCGcCGCU-CGGCGCCGCCC-GC-GGCGc -3'
miRNA:   3'- -GC-GCGAgGUCGCGGCGGGuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 5457 0.67 0.419772
Target:  5'- gGCGCUCCAGCaugaCGgCguGCUGGaCa -3'
miRNA:   3'- gCGCGAGGUCGcg--GCgGguCGACC-Gc -5'
23571 3' -65.2 NC_005261.1 + 5601 0.68 0.334159
Target:  5'- cCGCGCccgcgUCCucGGCGCCagcGCCCc-CUGGCGg -3'
miRNA:   3'- -GCGCG-----AGG--UCGCGG---CGGGucGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 5747 0.67 0.403239
Target:  5'- gGCGCgUCCcaggacggcgaGGCGCUGCCgGcGCggagGGCGg -3'
miRNA:   3'- gCGCG-AGG-----------UCGCGGCGGgU-CGa---CCGC- -5'
23571 3' -65.2 NC_005261.1 + 5895 0.66 0.445324
Target:  5'- uCG-GCUggCUAGCucgGCCGgCCGGCUGGCu -3'
miRNA:   3'- -GCgCGA--GGUCG---CGGCgGGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 6200 0.72 0.184708
Target:  5'- gCGgGC-CCAGCuggcCCGCCCAGacCUGGCGg -3'
miRNA:   3'- -GCgCGaGGUCGc---GGCGGGUC--GACCGC- -5'
23571 3' -65.2 NC_005261.1 + 6238 0.66 0.480699
Target:  5'- uGCGC-CCGGgGagggccugcCCGCCCcGCggGGCGg -3'
miRNA:   3'- gCGCGaGGUCgC---------GGCGGGuCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 6313 0.68 0.341391
Target:  5'- cCGCGCgcgCCaaaaAGC-CCGUCCAGCgGGUGc -3'
miRNA:   3'- -GCGCGa--GG----UCGcGGCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 6469 0.69 0.32704
Target:  5'- gGCGCgCC--CGCCGCgCCGGCcGGCGu -3'
miRNA:   3'- gCGCGaGGucGCGGCG-GGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 6542 0.76 0.107741
Target:  5'- gGCGgUCCAGCGCCGCgC-GCagGGCGg -3'
miRNA:   3'- gCGCgAGGUCGCGGCGgGuCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 6794 0.73 0.176492
Target:  5'- gGCGCggcgcaaggggggcgCCGGCGCCGCugCCGGCagcGGCGg -3'
miRNA:   3'- gCGCGa--------------GGUCGCGGCG--GGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 7032 0.66 0.471723
Target:  5'- gGCGCgCCGGCGgcgaCCGCgCC-GCgGGCGu -3'
miRNA:   3'- gCGCGaGGUCGC----GGCG-GGuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 7362 0.69 0.306361
Target:  5'- aGCGaggCCAggccGCGgCGCCCGGCcgGGCGc -3'
miRNA:   3'- gCGCga-GGU----CGCgGCGGGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 7658 0.74 0.141507
Target:  5'- cCGCGCggCGGCGCuucCGCCCGGCgGGCc -3'
miRNA:   3'- -GCGCGagGUCGCG---GCGGGUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 7893 0.69 0.306361
Target:  5'- aGCGCgUCCccgAGCGCgGCCgGGCcguccaUGGCGc -3'
miRNA:   3'- gCGCG-AGG---UCGCGgCGGgUCG------ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 9155 0.73 0.163785
Target:  5'- uCGgGCUgggacCUGGCGCCGCCCGGCcagguacgugGGCGg -3'
miRNA:   3'- -GCgCGA-----GGUCGCGGCGGGUCGa---------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.