miRNA display CGI


Results 41 - 60 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 64926 0.77 0.085896
Target:  5'- gCGUGCUCCuGCucGCCGCCCAGg-GGCGc -3'
miRNA:   3'- -GCGCGAGGuCG--CGGCGGGUCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 44380 0.77 0.090126
Target:  5'- gCGCGcCUCguggacugcucggCGGCGCCGCCCGGCggcugcGGCGg -3'
miRNA:   3'- -GCGC-GAG-------------GUCGCGGCGGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 101774 0.77 0.090354
Target:  5'- cCGC-CUCCAGCgcgcguGCCGCCCGGCggGGCu -3'
miRNA:   3'- -GCGcGAGGUCG------CGGCGGGUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 42468 0.77 0.092664
Target:  5'- gCGCGCgaggcucCCGGCGCC-CCCGGCggcGGCGg -3'
miRNA:   3'- -GCGCGa------GGUCGCGGcGGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 134382 0.76 0.09503
Target:  5'- cCGCGCggcgCCGGCGCCGCugccgCCAGCgcccgGGCc -3'
miRNA:   3'- -GCGCGa---GGUCGCGGCG-----GGUCGa----CCGc -5'
23571 3' -65.2 NC_005261.1 + 29865 0.76 0.09503
Target:  5'- cCGCGCggcgCCGGCGCCGCugccgCCAGCgcccgGGCc -3'
miRNA:   3'- -GCGCGa---GGUCGCGGCG-----GGUCGa----CCGc -5'
23571 3' -65.2 NC_005261.1 + 67504 0.76 0.09503
Target:  5'- cCGCGCguaguaggCCAGCGUCGCCgCGGCgcccgcGGCGg -3'
miRNA:   3'- -GCGCGa-------GGUCGCGGCGG-GUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 102378 0.76 0.09503
Target:  5'- aCGCGCUCCAGCGCggCGCgCAGCUccucGCGc -3'
miRNA:   3'- -GCGCGAGGUCGCG--GCGgGUCGAc---CGC- -5'
23571 3' -65.2 NC_005261.1 + 15326 0.76 0.097453
Target:  5'- uGCGCUCCAaCGCCGUCCcGgaGGCGc -3'
miRNA:   3'- gCGCGAGGUcGCGGCGGGuCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 100817 0.76 0.099935
Target:  5'- gCGCGUgcgCCuGCGCCGCCCaggccgggAGCUcGGCGa -3'
miRNA:   3'- -GCGCGa--GGuCGCGGCGGG--------UCGA-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 69122 0.76 0.099935
Target:  5'- gGUGCUCUAGCGCC-CCguagCAGCUGGCc -3'
miRNA:   3'- gCGCGAGGUCGCGGcGG----GUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 71138 0.76 0.099935
Target:  5'- aCGaCGCUCUcaAGCGCCGcCCCGGCaGGCu -3'
miRNA:   3'- -GC-GCGAGG--UCGCGGC-GGGUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 102436 0.76 0.102476
Target:  5'- cCGC-CUCCucggcGCGCCGCCCGGCcucGGCGc -3'
miRNA:   3'- -GCGcGAGGu----CGCGGCGGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 91196 0.76 0.105078
Target:  5'- gCGCGCUUCGGCGCCGU---GCUGGCc -3'
miRNA:   3'- -GCGCGAGGUCGCGGCGgguCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 19540 0.76 0.105078
Target:  5'- cCGCGUcaccgCCAGCGCCGUggggagcgCCAGCgGGCGg -3'
miRNA:   3'- -GCGCGa----GGUCGCGGCG--------GGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 49754 0.76 0.105078
Target:  5'- gCGCGCUCCGGCGCggcacggccCGCCCAcacGCUcacgcGGCGc -3'
miRNA:   3'- -GCGCGAGGUCGCG---------GCGGGU---CGA-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 77062 0.76 0.105078
Target:  5'- cCGCGCcuggCCGGUGCCGCgCGaggcGCUGGCGc -3'
miRNA:   3'- -GCGCGa---GGUCGCGGCGgGU----CGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 73554 0.76 0.105078
Target:  5'- aCGCGC-CCGGUGCCGCaCCacggcgacgaguGGCUGGUGc -3'
miRNA:   3'- -GCGCGaGGUCGCGGCG-GG------------UCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 60891 0.76 0.107741
Target:  5'- uGCGCUCauggcggggggCGGCGCCGgcggaagcUCCGGCUGGCGu -3'
miRNA:   3'- gCGCGAG-----------GUCGCGGC--------GGGUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 6542 0.76 0.107741
Target:  5'- gGCGgUCCAGCGCCGCgC-GCagGGCGg -3'
miRNA:   3'- gCGCgAGGUCGCGGCGgGuCGa-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.