miRNA display CGI


Results 61 - 80 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 68264 0.76 0.110469
Target:  5'- gGCGUUCUAGCGCgCGCCCGGa-GGCc -3'
miRNA:   3'- gCGCGAGGUCGCG-GCGGGUCgaCCGc -5'
23571 3' -65.2 NC_005261.1 + 106841 0.76 0.110469
Target:  5'- gCGCGUcgUCCAGCccGCCGCCUGGggGGCGg -3'
miRNA:   3'- -GCGCG--AGGUCG--CGGCGGGUCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 118496 0.75 0.112978
Target:  5'- gGCGCUgcggaccCUGGCGCCGCUCGGCgaGGCGc -3'
miRNA:   3'- gCGCGA-------GGUCGCGGCGGGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 85929 0.75 0.112978
Target:  5'- cCGUGCUCUggauggcggccagGGCGCCGCggaAGCUGGCGu -3'
miRNA:   3'- -GCGCGAGG-------------UCGCGGCGgg-UCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 33923 0.75 0.11326
Target:  5'- cCGCGuCUCUuGUGUCGCCCAGCaggaUGGCGc -3'
miRNA:   3'- -GCGC-GAGGuCGCGGCGGGUCG----ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 103464 0.75 0.11326
Target:  5'- cCGCGCccgucgCCAGgG-CGUCCAGCUGGCGc -3'
miRNA:   3'- -GCGCGa-----GGUCgCgGCGGGUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 64866 0.75 0.116118
Target:  5'- cCGCGUgCUGGCGCCGCCUgAGCcGGCGc -3'
miRNA:   3'- -GCGCGaGGUCGCGGCGGG-UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 99957 0.75 0.116118
Target:  5'- cCGCGUgcaCCAGcCGCCcccaGCCCAgGCUGGCGu -3'
miRNA:   3'- -GCGCGa--GGUC-GCGG----CGGGU-CGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 56062 0.75 0.119042
Target:  5'- cCGCGCcuUCC-GCGCCGCgCUuGCUGGCGc -3'
miRNA:   3'- -GCGCG--AGGuCGCGGCG-GGuCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 76850 0.75 0.119042
Target:  5'- uCGCuCUCCucGCGCCGCCUGGCgcccGGCGa -3'
miRNA:   3'- -GCGcGAGGu-CGCGGCGGGUCGa---CCGC- -5'
23571 3' -65.2 NC_005261.1 + 59422 0.75 0.122036
Target:  5'- gGCGCUgUcGCGCgGCCCGGCaGGCGc -3'
miRNA:   3'- gCGCGAgGuCGCGgCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 16593 0.75 0.122036
Target:  5'- cCGCGCUCgccggCGGCgGCCGCCgAGC-GGCGg -3'
miRNA:   3'- -GCGCGAG-----GUCG-CGGCGGgUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 35918 0.75 0.122036
Target:  5'- aGCGCggcCCcGCGCCgcaGCCCAGCgGGCGc -3'
miRNA:   3'- gCGCGa--GGuCGCGG---CGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 99868 0.75 0.122036
Target:  5'- cCGCGCgCCGcCGCCGCUCGGCgcgagGGCGu -3'
miRNA:   3'- -GCGCGaGGUcGCGGCGGGUCGa----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 60495 0.75 0.122036
Target:  5'- gGgGCUCCcaguuguaccGGCGCCGCUUGGCUGGgGg -3'
miRNA:   3'- gCgCGAGG----------UCGCGGCGGGUCGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 47212 0.75 0.122036
Target:  5'- uCGCGCUCCu-CGCCGCCggggcuCAGCUGGgGc -3'
miRNA:   3'- -GCGCGAGGucGCGGCGG------GUCGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 36859 0.75 0.125099
Target:  5'- cCGCGCUCC-GC-CCGCCCcgcacGCUGGCc -3'
miRNA:   3'- -GCGCGAGGuCGcGGCGGGu----CGACCGc -5'
23571 3' -65.2 NC_005261.1 + 130840 0.75 0.125099
Target:  5'- uGCGCUCaaccuugcGCGCgCGCCCGGCcgGGCGc -3'
miRNA:   3'- gCGCGAGgu------CGCG-GCGGGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 84634 0.75 0.125099
Target:  5'- aGCGCcuccaCCAGCGUguUGuCCCGGCUGGCGc -3'
miRNA:   3'- gCGCGa----GGUCGCG--GC-GGGUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 58847 0.75 0.128233
Target:  5'- aGCGagaUCCAGCGCCGCaaCCAGCUG-Ca -3'
miRNA:   3'- gCGCg--AGGUCGCGGCG--GGUCGACcGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.