miRNA display CGI


Results 61 - 80 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 108894 0.66 0.454033
Target:  5'- cCGCGCcgCCgaAGCGCacgcgGCCgGGCggcGGCGg -3'
miRNA:   3'- -GCGCGa-GG--UCGCGg----CGGgUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 110412 0.66 0.445324
Target:  5'- uCG-GCUggCUAGCucgGCCGgCCGGCUGGCu -3'
miRNA:   3'- -GCgCGA--GGUCG---CGGCgGGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 20164 0.66 0.454033
Target:  5'- gCGCgGCUgCGGCcgcuGCCGCggccgCCAGCgcgGGCGu -3'
miRNA:   3'- -GCG-CGAgGUCG----CGGCG-----GGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 70891 0.66 0.454033
Target:  5'- gCGgGC-CCGGCGCUGUUCcugcGGCUGaGCGc -3'
miRNA:   3'- -GCgCGaGGUCGCGGCGGG----UCGAC-CGC- -5'
23571 3' -65.2 NC_005261.1 + 78432 0.66 0.454033
Target:  5'- gGCGCcacgCCGGCcuGCCGCCCGccgccgucGCUG-CGg -3'
miRNA:   3'- gCGCGa---GGUCG--CGGCGGGU--------CGACcGC- -5'
23571 3' -65.2 NC_005261.1 + 79213 0.66 0.43671
Target:  5'- -cCGUUCCuggcGGCGCCGCUgGGCgagcccGGCGc -3'
miRNA:   3'- gcGCGAGG----UCGCGGCGGgUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 28776 0.66 0.445324
Target:  5'- aCGCGCgaagCgGGgGuuGCCUcuCUGGCGg -3'
miRNA:   3'- -GCGCGa---GgUCgCggCGGGucGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 133698 0.66 0.454033
Target:  5'- aGgGC-CCGGCGCCcucgccgcggcGCCCGcGCggGGCGc -3'
miRNA:   3'- gCgCGaGGUCGCGG-----------CGGGU-CGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 133309 0.66 0.470831
Target:  5'- gGCGCUCgCGGCcgcggcggaggcaGCCGCCgccgaAGCcgaGGCGg -3'
miRNA:   3'- gCGCGAG-GUCG-------------CGGCGGg----UCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 52565 0.66 0.462834
Target:  5'- gCGCGCaguUCCAGC-CCGUgCuGC-GGCGg -3'
miRNA:   3'- -GCGCG---AGGUCGcGGCGgGuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 86331 0.66 0.462834
Target:  5'- gCGCGC-CCGggcgauguagcGCGCCGCCU-GCUGccGCGc -3'
miRNA:   3'- -GCGCGaGGU-----------CGCGGCGGGuCGAC--CGC- -5'
23571 3' -65.2 NC_005261.1 + 71517 0.66 0.454033
Target:  5'- aGCGCaucaaCCGGCGCuCGCUgAGCgcGGCc -3'
miRNA:   3'- gCGCGa----GGUCGCG-GCGGgUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 91243 0.66 0.43671
Target:  5'- gGCGCggCGcGCGCUG-CCGGCgGGCGg -3'
miRNA:   3'- gCGCGagGU-CGCGGCgGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 102320 0.66 0.471723
Target:  5'- gGCGCUggggCC-GCGCUGCCgCGGCgggGGUc -3'
miRNA:   3'- gCGCGA----GGuCGCGGCGG-GUCGa--CCGc -5'
23571 3' -65.2 NC_005261.1 + 101458 0.66 0.471723
Target:  5'- gGCGCaacgcacgggCCGGCGUgcagggGCgCCAGCUGGCc -3'
miRNA:   3'- gCGCGa---------GGUCGCGg-----CG-GGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 26398 0.66 0.466379
Target:  5'- aCGCGCUCCgcgaccucagggagaAGCGCgaGCUCGGCcgacGCGa -3'
miRNA:   3'- -GCGCGAGG---------------UCGCGg-CGGGUCGac--CGC- -5'
23571 3' -65.2 NC_005261.1 + 93365 0.66 0.43671
Target:  5'- gGCGCUCgCGGCGgCGCUCuuccucgcGGCUG-CGg -3'
miRNA:   3'- gCGCGAG-GUCGCgGCGGG--------UCGACcGC- -5'
23571 3' -65.2 NC_005261.1 + 54915 0.66 0.454033
Target:  5'- gGCGU---GGCGCCGCCCgAGCUG-Ca -3'
miRNA:   3'- gCGCGaggUCGCGGCGGG-UCGACcGc -5'
23571 3' -65.2 NC_005261.1 + 74115 0.66 0.462834
Target:  5'- cCGCGCggCAcGUGCCGCCCGuGCcgcacuuugugGGCGc -3'
miRNA:   3'- -GCGCGagGU-CGCGGCGGGU-CGa----------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 134461 0.66 0.454033
Target:  5'- uGCGCUgCGGCcuGCCGCgaGGCgcuagaGGCGg -3'
miRNA:   3'- gCGCGAgGUCG--CGGCGggUCGa-----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.