miRNA display CGI


Results 41 - 60 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 75225 0.66 0.462834
Target:  5'- cCGCGCgggCgCGGcCGCCGagggCCGGCUGGa- -3'
miRNA:   3'- -GCGCGa--G-GUC-GCGGCg---GGUCGACCgc -5'
23571 3' -65.2 NC_005261.1 + 19640 0.66 0.445324
Target:  5'- gCGCgaGCUCCGcggcggcggcgcGCGCCGCCgCGcGCgcgGGCa -3'
miRNA:   3'- -GCG--CGAGGU------------CGCGGCGG-GU-CGa--CCGc -5'
23571 3' -65.2 NC_005261.1 + 70408 0.66 0.454033
Target:  5'- gGCcCUCCuGCGCgCGCCCGaguuGCcacugGGCGg -3'
miRNA:   3'- gCGcGAGGuCGCG-GCGGGU----CGa----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 78891 0.66 0.445324
Target:  5'- gGCGa--CGGCGgCGaCCCGGCgGGCGc -3'
miRNA:   3'- gCGCgagGUCGCgGC-GGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 109399 0.66 0.454033
Target:  5'- gGcCGCcUCAGCcgcgGCCGCCuCGGCUucGGCGg -3'
miRNA:   3'- gC-GCGaGGUCG----CGGCGG-GUCGA--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 53272 0.66 0.454033
Target:  5'- aCGCGC-CCgacgccucGGCgGCCGCCgAGgaGGUGc -3'
miRNA:   3'- -GCGCGaGG--------UCG-CGGCGGgUCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 119799 0.66 0.43671
Target:  5'- aCGCGCUgcCCGGCGaggaCGUCUGcGCUGGgGu -3'
miRNA:   3'- -GCGCGA--GGUCGCg---GCGGGU-CGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 77180 0.66 0.454033
Target:  5'- aGUGCUCCAG-GCCcaGCaccagCCAGCUGccGCGg -3'
miRNA:   3'- gCGCGAGGUCgCGG--CG-----GGUCGAC--CGC- -5'
23571 3' -65.2 NC_005261.1 + 42905 0.66 0.44273
Target:  5'- cCGUGUUCUgacccggacguaggGGuCGCaguccgucugCGCCCAGCUGGCc -3'
miRNA:   3'- -GCGCGAGG--------------UC-GCG----------GCGGGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 91243 0.66 0.43671
Target:  5'- gGCGCggCGcGCGCUG-CCGGCgGGCGg -3'
miRNA:   3'- gCGCGagGU-CGCGGCgGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 71517 0.66 0.454033
Target:  5'- aGCGCaucaaCCGGCGCuCGCUgAGCgcGGCc -3'
miRNA:   3'- gCGCGa----GGUCGCG-GCGGgUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 32858 0.66 0.434144
Target:  5'- gCGCGCacCCGcgcGCGCCGCCUgucacGGCcugccucacggccgUGGCGg -3'
miRNA:   3'- -GCGCGa-GGU---CGCGGCGGG-----UCG--------------ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 86331 0.66 0.462834
Target:  5'- gCGCGC-CCGggcgauguagcGCGCCGCCU-GCUGccGCGc -3'
miRNA:   3'- -GCGCGaGGU-----------CGCGGCGGGuCGAC--CGC- -5'
23571 3' -65.2 NC_005261.1 + 118982 0.66 0.43671
Target:  5'- gCGCGCUguUCAGCGCCcCCgCAGuCUcGCGg -3'
miRNA:   3'- -GCGCGA--GGUCGCGGcGG-GUC-GAcCGC- -5'
23571 3' -65.2 NC_005261.1 + 20164 0.66 0.454033
Target:  5'- gCGCgGCUgCGGCcgcuGCCGCggccgCCAGCgcgGGCGu -3'
miRNA:   3'- -GCG-CGAgGUCG----CGGCG-----GGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 51135 0.66 0.43671
Target:  5'- cCGCGCUCUGcGCGCUGCUgcaCGGCUacgugcugGGCc -3'
miRNA:   3'- -GCGCGAGGU-CGCGGCGG---GUCGA--------CCGc -5'
23571 3' -65.2 NC_005261.1 + 97169 0.66 0.462834
Target:  5'- gGCGgaCC-GCGCCGCCggcucugaGGCcGGCGc -3'
miRNA:   3'- gCGCgaGGuCGCGGCGGg-------UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 83457 0.66 0.43671
Target:  5'- gCGCGCcgUCCuGuCGcCCGCCgCA-CUGGCGg -3'
miRNA:   3'- -GCGCG--AGGuC-GC-GGCGG-GUcGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 37967 0.66 0.43671
Target:  5'- uGCGCcaCCGGCG-CGCCgacugggGGCUGGCa -3'
miRNA:   3'- gCGCGa-GGUCGCgGCGGg------UCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 114774 0.66 0.445324
Target:  5'- cCGCGggCCuGGCGCCuucuGCCCugaGGaCUGGCGc -3'
miRNA:   3'- -GCGCgaGG-UCGCGG----CGGG---UC-GACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.