Results 41 - 60 of 952 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23571 | 3' | -65.2 | NC_005261.1 | + | 12691 | 0.79 | 0.05857 |
Target: 5'- gGC-CUCUGGCGCCGCCCuGCgGGCGg -3' miRNA: 3'- gCGcGAGGUCGCGGCGGGuCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 78505 | 0.8 | 0.055632 |
Target: 5'- cCGCGCgccgCCGcUGCCGCCCGGCgGGCGg -3' miRNA: 3'- -GCGCGa---GGUcGCGGCGGGUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 133100 | 0.81 | 0.046436 |
Target: 5'- gCGCGCgagcgCCGGCggGCCGCCCgcgccgAGCUGGCGg -3' miRNA: 3'- -GCGCGa----GGUCG--CGGCGGG------UCGACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 135685 | 0.81 | 0.044093 |
Target: 5'- cCGCGC-CCAGCGCCGCggcGCUGGCGg -3' miRNA: 3'- -GCGCGaGGUCGCGGCGgguCGACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3668 | 0.82 | 0.037736 |
Target: 5'- uGCGCagCCgcGGCGCCGCCCAGCaaggGGCGg -3' miRNA: 3'- gCGCGa-GG--UCGCGGCGGGUCGa---CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 135952 | 0.78 | 0.078796 |
Target: 5'- gGCGCUggCGGCGCCGCCCGGCgaggacgagcgccGGCGg -3' miRNA: 3'- gCGCGAg-GUCGCGGCGGGUCGa------------CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 136345 | 0.78 | 0.079601 |
Target: 5'- gCGCGCgCUGGCGCgCGCCguGCUGGCc -3' miRNA: 3'- -GCGCGaGGUCGCG-GCGGguCGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 68264 | 0.76 | 0.110469 |
Target: 5'- gGCGUUCUAGCGCgCGCCCGGa-GGCc -3' miRNA: 3'- gCGCGAGGUCGCG-GCGGGUCgaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 6542 | 0.76 | 0.107741 |
Target: 5'- gGCGgUCCAGCGCCGCgC-GCagGGCGg -3' miRNA: 3'- gCGCgAGGUCGCGGCGgGuCGa-CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 60891 | 0.76 | 0.107741 |
Target: 5'- uGCGCUCauggcggggggCGGCGCCGgcggaagcUCCGGCUGGCGu -3' miRNA: 3'- gCGCGAG-----------GUCGCGGC--------GGGUCGACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 73554 | 0.76 | 0.105078 |
Target: 5'- aCGCGC-CCGGUGCCGCaCCacggcgacgaguGGCUGGUGc -3' miRNA: 3'- -GCGCGaGGUCGCGGCG-GG------------UCGACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 49754 | 0.76 | 0.105078 |
Target: 5'- gCGCGCUCCGGCGCggcacggccCGCCCAcacGCUcacgcGGCGc -3' miRNA: 3'- -GCGCGAGGUCGCG---------GCGGGU---CGA-----CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 69122 | 0.76 | 0.099935 |
Target: 5'- gGUGCUCUAGCGCC-CCguagCAGCUGGCc -3' miRNA: 3'- gCGCGAGGUCGCGGcGG----GUCGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 15326 | 0.76 | 0.097453 |
Target: 5'- uGCGCUCCAaCGCCGUCCcGgaGGCGc -3' miRNA: 3'- gCGCGAGGUcGCGGCGGGuCgaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 134382 | 0.76 | 0.09503 |
Target: 5'- cCGCGCggcgCCGGCGCCGCugccgCCAGCgcccgGGCc -3' miRNA: 3'- -GCGCGa---GGUCGCGGCG-----GGUCGa----CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 42468 | 0.77 | 0.092664 |
Target: 5'- gCGCGCgaggcucCCGGCGCC-CCCGGCggcGGCGg -3' miRNA: 3'- -GCGCGa------GGUCGCGGcGGGUCGa--CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 44380 | 0.77 | 0.090126 |
Target: 5'- gCGCGcCUCguggacugcucggCGGCGCCGCCCGGCggcugcGGCGg -3' miRNA: 3'- -GCGC-GAG-------------GUCGCGGCGGGUCGa-----CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 94020 | 0.77 | 0.081649 |
Target: 5'- gCGCGCUCCcGgGCCGCCUGcagcucgcgcucGCUGGCGc -3' miRNA: 3'- -GCGCGAGGuCgCGGCGGGU------------CGACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 54521 | 0.78 | 0.080414 |
Target: 5'- aCGCGCUCauggugcgcuggcugCGGCGCCGCCuCGGC-GGCGc -3' miRNA: 3'- -GCGCGAG---------------GUCGCGGCGG-GUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 24684 | 0.78 | 0.079601 |
Target: 5'- uCGCGgUCCAGCGCgCGCacggccccgagCCGGCUGGCc -3' miRNA: 3'- -GCGCgAGGUCGCG-GCG-----------GGUCGACCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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