miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 42468 0.77 0.092664
Target:  5'- gCGCGCgaggcucCCGGCGCC-CCCGGCggcGGCGg -3'
miRNA:   3'- -GCGCGa------GGUCGCGGcGGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 44380 0.77 0.090126
Target:  5'- gCGCGcCUCguggacugcucggCGGCGCCGCCCGGCggcugcGGCGg -3'
miRNA:   3'- -GCGC-GAG-------------GUCGCGGCGGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 38378 0.78 0.070079
Target:  5'- gCGCGCggcggCCGGUGCCGCUgGGCggcggGGCGg -3'
miRNA:   3'- -GCGCGa----GGUCGCGGCGGgUCGa----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 41040 0.79 0.066585
Target:  5'- gGCGCuUCCGGcCGCgGCCCGGCcGGCGc -3'
miRNA:   3'- gCGCG-AGGUC-GCGgCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 68700 0.79 0.05857
Target:  5'- gCGCGCgcgCCAGCGcCCGCgCCAGCUccGGCa -3'
miRNA:   3'- -GCGCGa--GGUCGC-GGCG-GGUCGA--CCGc -5'
23571 3' -65.2 NC_005261.1 + 12691 0.79 0.05857
Target:  5'- gGC-CUCUGGCGCCGCCCuGCgGGCGg -3'
miRNA:   3'- gCGcGAGGUCGCGGCGGGuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 78505 0.8 0.055632
Target:  5'- cCGCGCgccgCCGcUGCCGCCCGGCgGGCGg -3'
miRNA:   3'- -GCGCGa---GGUcGCGGCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 133100 0.81 0.046436
Target:  5'- gCGCGCgagcgCCGGCggGCCGCCCgcgccgAGCUGGCGg -3'
miRNA:   3'- -GCGCGa----GGUCG--CGGCGGG------UCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 135685 0.81 0.044093
Target:  5'- cCGCGC-CCAGCGCCGCggcGCUGGCGg -3'
miRNA:   3'- -GCGCGaGGUCGCGGCGgguCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 3668 0.82 0.037736
Target:  5'- uGCGCagCCgcGGCGCCGCCCAGCaaggGGCGg -3'
miRNA:   3'- gCGCGa-GG--UCGCGGCGGGUCGa---CCGC- -5'
23571 3' -65.2 NC_005261.1 + 104633 0.78 0.073561
Target:  5'- cCGCccGCgCCGGCGCCGCCCcuggugcucgcggGGCUGGCa -3'
miRNA:   3'- -GCG--CGaGGUCGCGGCGGG-------------UCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 50055 0.78 0.073749
Target:  5'- gGCGCcgCCGGCGUCGCCCcggcccGGCUGcGCGg -3'
miRNA:   3'- gCGCGa-GGUCGCGGCGGG------UCGAC-CGC- -5'
23571 3' -65.2 NC_005261.1 + 94020 0.77 0.081649
Target:  5'- gCGCGCUCCcGgGCCGCCUGcagcucgcgcucGCUGGCGc -3'
miRNA:   3'- -GCGCGAGGuCgCGGCGGGU------------CGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 54521 0.78 0.080414
Target:  5'- aCGCGCUCauggugcgcuggcugCGGCGCCGCCuCGGC-GGCGc -3'
miRNA:   3'- -GCGCGAG---------------GUCGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 24684 0.78 0.079601
Target:  5'- uCGCGgUCCAGCGCgCGCacggccccgagCCGGCUGGCc -3'
miRNA:   3'- -GCGCgAGGUCGCG-GCG-----------GGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 136345 0.78 0.079601
Target:  5'- gCGCGCgCUGGCGCgCGCCguGCUGGCc -3'
miRNA:   3'- -GCGCGaGGUCGCG-GCGGguCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 135952 0.78 0.078796
Target:  5'- gGCGCUggCGGCGCCGCCCGGCgaggacgagcgccGGCGg -3'
miRNA:   3'- gCGCGAg-GUCGCGGCGGGUCGa------------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 35881 0.78 0.077603
Target:  5'- gCGCGCUCCGccuucGaCGCgGCCgAGCUGGCGc -3'
miRNA:   3'- -GCGCGAGGU-----C-GCGgCGGgUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 108357 0.78 0.07546
Target:  5'- gGCGCUggcggcagcggcgCCGGCGCCGCgCGGCcGGCGa -3'
miRNA:   3'- gCGCGA-------------GGUCGCGGCGgGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 104866 0.78 0.073749
Target:  5'- cCGCaGC-CCGGCGCgGCCCGGC-GGCGg -3'
miRNA:   3'- -GCG-CGaGGUCGCGgCGGGUCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.