miRNA display CGI

Results 21 - 40 of 952 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23571	3'	-65.2	NC_005261.1	+	46492	0.66	0.471723
	Target:  5'- gGCGCccUCCgcggGGCGCaGCCCGGCgucGCGc -3' miRNA:   3'- gCGCG--AGG----UCGCGgCGGGUCGac-CGC- -5'
23571	3'	-65.2	NC_005261.1	+	88582	0.66	0.471723
	Target:  5'- -cCGCUUCGcCGCCgagGCCCGGCccGGCGg -3' miRNA:   3'- gcGCGAGGUcGCGG---CGGGUCGa-CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	30100	0.66	0.480699
	Target:  5'- gCGUGCUCCGG-GCaGCUgAGCugcuUGGCGc -3' miRNA:   3'- -GCGCGAGGUCgCGgCGGgUCG----ACCGC- -5'
23571	3'	-65.2	NC_005261.1	+	48850	0.66	0.480699
	Target:  5'- cCGCGCagCAG-GCCcagcGCCCGGgccaUGGCGg -3' miRNA:   3'- -GCGCGagGUCgCGG----CGGGUCg---ACCGC- -5'
23571	3'	-65.2	NC_005261.1	+	64999	0.66	0.466379
	Target:  5'- gGUGCUCCAGgagguccuuguagacCGCCGUgCAGUccucgGGCa -3' miRNA:   3'- gCGCGAGGUC---------------GCGGCGgGUCGa----CCGc -5'
23571	3'	-65.2	NC_005261.1	+	76606	0.66	0.471723
	Target:  5'- gCGCGCUgCCGccCGCCGCCCcGCUG-Cc -3' miRNA:   3'- -GCGCGA-GGUc-GCGGCGGGuCGACcGc -5'
23571	3'	-65.2	NC_005261.1	+	70063	0.66	0.471723
	Target:  5'- cCGCGa-CCAGCGCCccggccaccgaaGCCCAGaCguacgccGGCGa -3' miRNA:   3'- -GCGCgaGGUCGCGG------------CGGGUC-Ga------CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	83004	0.66	0.481601
	Target:  5'- uCGCGCaccgagccgccgucgCCGGCGCC-CCCGGgaGGg- -3' miRNA:   3'- -GCGCGa--------------GGUCGCGGcGGGUCgaCCgc -5'
23571	3'	-65.2	NC_005261.1	+	98677	0.66	0.471723
	Target:  5'- gCGgGCUCCgccggggccggaGGCGCgGCCgGaGCUGGgGc -3' miRNA:   3'- -GCgCGAGG------------UCGCGgCGGgU-CGACCgC- -5'
23571	3'	-65.2	NC_005261.1	+	116697	0.66	0.481601
	Target:  5'- aGCGCcucgcucaucggccgCCAGCuggccgacgucGCCGCCCuGCUGaGCc -3' miRNA:   3'- gCGCGa--------------GGUCG-----------CGGCGGGuCGAC-CGc -5'
23571	3'	-65.2	NC_005261.1	+	46964	0.66	0.471723
	Target:  5'- cCGCGCcgucgCCGcuGcCGCCGCCC-GCcGGCa -3' miRNA:   3'- -GCGCGa----GGU--C-GCGGCGGGuCGaCCGc -5'
23571	3'	-65.2	NC_005261.1	+	30267	0.66	0.471723
	Target:  5'- gGCGCggcggcCCGcGCGcCCGCCUggacGCUGGCc -3' miRNA:   3'- gCGCGa-----GGU-CGC-GGCGGGu---CGACCGc -5'
23571	3'	-65.2	NC_005261.1	+	93210	0.66	0.480699
	Target:  5'- uCGgGCUCCAGCa--GCgCCAGCgcGGCa -3' miRNA:   3'- -GCgCGAGGUCGcggCG-GGUCGa-CCGc -5'
23571	3'	-65.2	NC_005261.1	+	20035	0.66	0.480699
	Target:  5'- aGCGggCCGGUuCCGUCCGGC-GGUGu -3' miRNA:   3'- gCGCgaGGUCGcGGCGGGUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	104162	0.66	0.480699
	Target:  5'- cCGCGCcgUCCgcgGGCGCCGCgC-GCgggucgucgGGCGg -3' miRNA:   3'- -GCGCG--AGG---UCGCGGCGgGuCGa--------CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	41037	0.66	0.480699
	Target:  5'- uCGuCGUUguccCCGGCGCCgGCCUcagAGCcGGCGg -3' miRNA:   3'- -GC-GCGA----GGUCGCGG-CGGG---UCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	98555	0.66	0.462834
	Target:  5'- cCGCGaaaUCCGGCgggcgGCCGUCCuccgcgGGCUcgGGCGa -3' miRNA:   3'- -GCGCg--AGGUCG-----CGGCGGG------UCGA--CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	14240	0.66	0.466379
	Target:  5'- cCGCGCcggCCGGgGCCuuuGCCCcggugucggcuucggGGCUGGgGc -3' miRNA:   3'- -GCGCGa--GGUCgCGG---CGGG---------------UCGACCgC- -5'
23571	3'	-65.2	NC_005261.1	+	28792	0.66	0.470831
	Target:  5'- gGCGCUCgCGGCcgcggcggaggcaGCCGCCgccgaAGCcgaGGCGg -3' miRNA:   3'- gCGCGAG-GUCG-------------CGGCGGg----UCGa--CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	31580	0.66	0.471723
	Target:  5'- gGCGCgCCGGacgugaGCgCGCUCGGCgcgcagGGCGu -3' miRNA:   3'- gCGCGaGGUCg-----CG-GCGGGUCGa-----CCGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home