miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 77823 0.66 0.484312
Target:  5'- uGcCGCcCCAGCaccaccgccccccucGCCGCCaCAGCcGGCu -3'
miRNA:   3'- gC-GCGaGGUCG---------------CGGCGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 4137 0.66 0.471723
Target:  5'- aGCcCUgCAcGCGCCGCUgCAGCaGGCGc -3'
miRNA:   3'- gCGcGAgGU-CGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 23689 0.66 0.471723
Target:  5'- aGCGCcCCcgacgcgaGGC-CCGCCCGGUcgggUGGCa -3'
miRNA:   3'- gCGCGaGG--------UCGcGGCGGGUCG----ACCGc -5'
23571 3' -65.2 NC_005261.1 + 82939 0.66 0.471723
Target:  5'- cCGCGUaaagCCAGCGCggCGCCgGGCggaagacgUGGUGc -3'
miRNA:   3'- -GCGCGa---GGUCGCG--GCGGgUCG--------ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 6238 0.66 0.480699
Target:  5'- uGCGC-CCGGgGagggccugcCCGCCCcGCggGGCGg -3'
miRNA:   3'- gCGCGaGGUCgC---------GGCGGGuCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 103095 0.66 0.462834
Target:  5'- cCGgGC-CCAGC-CCGgCCAGCgcccccGGCGc -3'
miRNA:   3'- -GCgCGaGGUCGcGGCgGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 132378 0.66 0.469048
Target:  5'- cCGCGCUCgCGGCGCUGuucCCCGaggccgccgccgacGcCUGGCc -3'
miRNA:   3'- -GCGCGAG-GUCGCGGC---GGGU--------------C-GACCGc -5'
23571 3' -65.2 NC_005261.1 + 61000 0.66 0.480699
Target:  5'- cCGCGcCUCCGGCuccggcaucGCCGUCguGg-GGCGg -3'
miRNA:   3'- -GCGC-GAGGUCG---------CGGCGGguCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 20333 0.66 0.471723
Target:  5'- cCGCGCaCgAGCGaCGCCCgcGGCUGccGCGa -3'
miRNA:   3'- -GCGCGaGgUCGCgGCGGG--UCGAC--CGC- -5'
23571 3' -65.2 NC_005261.1 + 46492 0.66 0.471723
Target:  5'- gGCGCccUCCgcggGGCGCaGCCCGGCgucGCGc -3'
miRNA:   3'- gCGCG--AGG----UCGCGgCGGGUCGac-CGC- -5'
23571 3' -65.2 NC_005261.1 + 106568 0.66 0.480699
Target:  5'- gCGCGCgccggccCCGGgGCCGCCgC-GC-GGCGc -3'
miRNA:   3'- -GCGCGa------GGUCgCGGCGG-GuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 107989 0.66 0.480699
Target:  5'- uCGUcuGCUCCAGCccGCCGucgggcagcCCCAGCagcGGCa -3'
miRNA:   3'- -GCG--CGAGGUCG--CGGC---------GGGUCGa--CCGc -5'
23571 3' -65.2 NC_005261.1 + 64579 0.66 0.462834
Target:  5'- aCGCGgUCgUAGUGCaCGCCCAuGCUGcaGCa -3'
miRNA:   3'- -GCGCgAG-GUCGCG-GCGGGU-CGAC--CGc -5'
23571 3' -65.2 NC_005261.1 + 99234 0.66 0.462834
Target:  5'- gGCGCgUCGGCGUCGCgCCcGCcgGGCc -3'
miRNA:   3'- gCGCGaGGUCGCGGCG-GGuCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 31580 0.66 0.471723
Target:  5'- gGCGCgCCGGacgugaGCgCGCUCGGCgcgcagGGCGu -3'
miRNA:   3'- gCGCGaGGUCg-----CG-GCGGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 3654 0.66 0.480699
Target:  5'- aGCGCgUCUggAGCGCagGCCgCGGCcGGCa -3'
miRNA:   3'- gCGCG-AGG--UCGCGg-CGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 113302 0.66 0.480699
Target:  5'- -uCGCUgCCGcGgGCCuggGCCCGGCUGcGCGa -3'
miRNA:   3'- gcGCGA-GGU-CgCGG---CGGGUCGAC-CGC- -5'
23571 3' -65.2 NC_005261.1 + 41037 0.66 0.480699
Target:  5'- uCGuCGUUguccCCGGCGCCgGCCUcagAGCcGGCGg -3'
miRNA:   3'- -GC-GCGA----GGUCGCGG-CGGG---UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 70178 0.66 0.471723
Target:  5'- gGCGCgggAGCgGCCGCUguGgaGGCGg -3'
miRNA:   3'- gCGCGaggUCG-CGGCGGguCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 99543 0.66 0.471723
Target:  5'- gGCGCgUCCAgGCGgCGCgCCAGgaaGGCGu -3'
miRNA:   3'- gCGCG-AGGU-CGCgGCG-GGUCga-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.