miRNA display CGI

Results 21 - 40 of 952 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23571	3'	-65.2	NC_005261.1	+	104633	0.78	0.073561
	Target:  5'- cCGCccGCgCCGGCGCCGCCCcuggugcucgcggGGCUGGCa -3' miRNA:   3'- -GCG--CGaGGUCGCGGCGGG-------------UCGACCGc -5'
23571	3'	-65.2	NC_005261.1	+	138020	0.78	0.073749
	Target:  5'- cCGCaGC-CCGGCGCgGCCCGGC-GGCGg -3' miRNA:   3'- -GCG-CGaGGUCGCGgCGGGUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	50055	0.78	0.073749
	Target:  5'- gGCGCcgCCGGCGUCGCCCcggcccGGCUGcGCGg -3' miRNA:   3'- gCGCGa-GGUCGCGGCGGG------UCGAC-CGC- -5'
23571	3'	-65.2	NC_005261.1	+	104866	0.78	0.073749
	Target:  5'- cCGCaGC-CCGGCGCgGCCCGGC-GGCGg -3' miRNA:   3'- -GCG-CGaGGUCGCGgCGGGUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	101446	0.78	0.073749
	Target:  5'- gCGCGgUCCAGCGCUGgcCCCAGCgccgccGGCGg -3' miRNA:   3'- -GCGCgAGGUCGCGGC--GGGUCGa-----CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	349	0.78	0.073749
	Target:  5'- cCGCaGC-CCGGCGCgGCCCGGC-GGCGg -3' miRNA:   3'- -GCG-CGaGGUCGCGgCGGGUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	3840	0.78	0.07546
	Target:  5'- gGCGCUggcggcagcggcgCCGGCGCCGCgCGGCcGGCGa -3' miRNA:   3'- gCGCGA-------------GGUCGCGGCGgGUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	108357	0.78	0.07546
	Target:  5'- gGCGCUggcggcagcggcgCCGGCGCCGCgCGGCcGGCGa -3' miRNA:   3'- gCGCGA-------------GGUCGCGGCGgGUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	21406	0.78	0.075652
	Target:  5'- uGCGUUCCcGCGCCGCgCCGGCcGGUGc -3' miRNA:   3'- gCGCGAGGuCGCGGCG-GGUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	35881	0.78	0.077603
	Target:  5'- gCGCGCUCCGccuucGaCGCgGCCgAGCUGGCGc -3' miRNA:   3'- -GCGCGAGGU-----C-GCGgCGGgUCGACCGC- -5'
23571	3'	-65.2	NC_005261.1	+	118927	0.78	0.077603
	Target:  5'- cCGCGggCgCGGCGCCGCgCGGCUGGCc -3' miRNA:   3'- -GCGCgaG-GUCGCGGCGgGUCGACCGc -5'
23571	3'	-65.2	NC_005261.1	+	135952	0.78	0.078796
	Target:  5'- gGCGCUggCGGCGCCGCCCGGCgaggacgagcgccGGCGg -3' miRNA:   3'- gCGCGAg-GUCGCGGCGGGUCGa------------CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	31435	0.78	0.078796
	Target:  5'- gGCGCUggCGGCGCCGCCCGGCgaggacgagcgccGGCGg -3' miRNA:   3'- gCGCGAg-GUCGCGGCGGGUCGa------------CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	31828	0.78	0.079601
	Target:  5'- gCGCGCgCUGGCGCgCGCCguGCUGGCc -3' miRNA:   3'- -GCGCGaGGUCGCG-GCGGguCGACCGc -5'
23571	3'	-65.2	NC_005261.1	+	24684	0.78	0.079601
	Target:  5'- uCGCGgUCCAGCGCgCGCacggccccgagCCGGCUGGCc -3' miRNA:   3'- -GCGCgAGGUCGCG-GCG-----------GGUCGACCGc -5'
23571	3'	-65.2	NC_005261.1	+	136345	0.78	0.079601
	Target:  5'- gCGCGCgCUGGCGCgCGCCguGCUGGCc -3' miRNA:   3'- -GCGCGaGGUCGCG-GCGGguCGACCGc -5'
23571	3'	-65.2	NC_005261.1	+	54521	0.78	0.080414
	Target:  5'- aCGCGCUCauggugcgcuggcugCGGCGCCGCCuCGGC-GGCGc -3' miRNA:   3'- -GCGCGAG---------------GUCGCGGCGG-GUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	87475	0.77	0.081649
	Target:  5'- gCGCGCgucaggUUCGGCGCgGCCguGCUGGCGc -3' miRNA:   3'- -GCGCG------AGGUCGCGgCGGguCGACCGC- -5'
23571	3'	-65.2	NC_005261.1	+	94020	0.77	0.081649
	Target:  5'- gCGCGCUCCcGgGCCGCCUGcagcucgcgcucGCUGGCGc -3' miRNA:   3'- -GCGCGAGGuCgCGGCGGGU------------CGACCGC- -5'
23571	3'	-65.2	NC_005261.1	+	62081	0.77	0.083535
	Target:  5'- uCGCGCga-GGCGCUGCCCAGCugcacgaUGGCGu -3' miRNA:   3'- -GCGCGaggUCGCGGCGGGUCG-------ACCGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home