miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 2904 0.69 0.32704
Target:  5'- cCGgGCcaaagUCCAGCacgGCCGCCCAG--GGCGa -3'
miRNA:   3'- -GCgCG-----AGGUCG---CGGCGGGUCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 2951 0.67 0.39836
Target:  5'- cCGgGCUCCGGCccggacuaggGCCcgggcugaggcugggGCUCGGCcUGGCGg -3'
miRNA:   3'- -GCgCGAGGUCG----------CGG---------------CGGGUCG-ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 3013 0.66 0.462834
Target:  5'- aCGCGCUCgGccguggcccucuGCGCCGCCuCGGCcauGCu -3'
miRNA:   3'- -GCGCGAGgU------------CGCGGCGG-GUCGac-CGc -5'
23571 3' -65.2 NC_005261.1 + 3139 0.68 0.332012
Target:  5'- uCGCGCUCCgccgccgggccgcgAGCccGCCGCCggaaAGC-GGCGg -3'
miRNA:   3'- -GCGCGAGG--------------UCG--CGGCGGg---UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 3451 0.68 0.337039
Target:  5'- gCGCGCgggCCGccGCGCCGCgcgucgaguaccgcgCCAGCggGGCc -3'
miRNA:   3'- -GCGCGa--GGU--CGCGGCG---------------GGUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 3503 0.74 0.141507
Target:  5'- uCGCGCcgCCAGCGCgGCcgccuCCAGCgcGGCGg -3'
miRNA:   3'- -GCGCGa-GGUCGCGgCG-----GGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 3582 0.69 0.324926
Target:  5'- gCGCGCUCCAccgcgucgcgggccGCGCCaagcaGCUCAGCUGcccggagcacGCGc -3'
miRNA:   3'- -GCGCGAGGU--------------CGCGG-----CGGGUCGAC----------CGC- -5'
23571 3' -65.2 NC_005261.1 + 3654 0.66 0.480699
Target:  5'- aGCGCgUCUggAGCGCagGCCgCGGCcGGCa -3'
miRNA:   3'- gCGCG-AGG--UCGCGg-CGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 3668 0.82 0.037736
Target:  5'- uGCGCagCCgcGGCGCCGCCCAGCaaggGGCGg -3'
miRNA:   3'- gCGCGa-GG--UCGCGGCGGGUCGa---CCGC- -5'
23571 3' -65.2 NC_005261.1 + 3745 0.67 0.395128
Target:  5'- aGUGCagCAGCgcgacgacGCCGCCCAcgaUGGCGg -3'
miRNA:   3'- gCGCGagGUCG--------CGGCGGGUcg-ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 3749 0.67 0.419772
Target:  5'- gGCGCaCC-GCGCCGCCUcuAGCgccucgcGGCa -3'
miRNA:   3'- gCGCGaGGuCGCGGCGGG--UCGa------CCGc -5'
23571 3' -65.2 NC_005261.1 + 3840 0.78 0.07546
Target:  5'- gGCGCUggcggcagcggcgCCGGCGCCGCgCGGCcGGCGa -3'
miRNA:   3'- gCGCGA-------------GGUCGCGGCGgGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 3852 0.68 0.340663
Target:  5'- -cCGCUCUcgccgucgccagcGGCGCCGCCCcccGCgcGGCGg -3'
miRNA:   3'- gcGCGAGG-------------UCGCGGCGGGu--CGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 3916 0.71 0.217434
Target:  5'- cCGCGCcgCCGGCGCCgGCCUccggguaGGCcaugGGCGc -3'
miRNA:   3'- -GCGCGa-GGUCGCGG-CGGG-------UCGa---CCGC- -5'
23571 3' -65.2 NC_005261.1 + 3924 0.67 0.387124
Target:  5'- --aGCUCCAGCGCgGCgaaGGC-GGCGa -3'
miRNA:   3'- gcgCGAGGUCGCGgCGgg-UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 4137 0.66 0.471723
Target:  5'- aGCcCUgCAcGCGCCGCUgCAGCaGGCGc -3'
miRNA:   3'- gCGcGAgGU-CGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 4377 0.66 0.454033
Target:  5'- cCGCGCcgCCgaAGCGCacgcgGCCgGGCggcGGCGg -3'
miRNA:   3'- -GCGCGa-GG--UCGCGg----CGGgUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 4501 0.66 0.462834
Target:  5'- gGCGUugUCC-GCGCCGcCCCAGaCguagacGGCGc -3'
miRNA:   3'- gCGCG--AGGuCGCGGC-GGGUC-Ga-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 4501 0.71 0.244709
Target:  5'- uGCGCgggccCCAGuCGCgCGCCCGcGCgGGCGc -3'
miRNA:   3'- gCGCGa----GGUC-GCG-GCGGGU-CGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 4882 0.66 0.454033
Target:  5'- gGcCGCcUCAGCcgcgGCCGCCuCGGCUucGGCGg -3'
miRNA:   3'- gC-GCGaGGUCG----CGGCGG-GUCGA--CCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.