Results 21 - 40 of 952 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23571 | 3' | -65.2 | NC_005261.1 | + | 2904 | 0.69 | 0.32704 |
Target: 5'- cCGgGCcaaagUCCAGCacgGCCGCCCAG--GGCGa -3' miRNA: 3'- -GCgCG-----AGGUCG---CGGCGGGUCgaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 2951 | 0.67 | 0.39836 |
Target: 5'- cCGgGCUCCGGCccggacuaggGCCcgggcugaggcugggGCUCGGCcUGGCGg -3' miRNA: 3'- -GCgCGAGGUCG----------CGG---------------CGGGUCG-ACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3013 | 0.66 | 0.462834 |
Target: 5'- aCGCGCUCgGccguggcccucuGCGCCGCCuCGGCcauGCu -3' miRNA: 3'- -GCGCGAGgU------------CGCGGCGG-GUCGac-CGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3139 | 0.68 | 0.332012 |
Target: 5'- uCGCGCUCCgccgccgggccgcgAGCccGCCGCCggaaAGC-GGCGg -3' miRNA: 3'- -GCGCGAGG--------------UCG--CGGCGGg---UCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3451 | 0.68 | 0.337039 |
Target: 5'- gCGCGCgggCCGccGCGCCGCgcgucgaguaccgcgCCAGCggGGCc -3' miRNA: 3'- -GCGCGa--GGU--CGCGGCG---------------GGUCGa-CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3503 | 0.74 | 0.141507 |
Target: 5'- uCGCGCcgCCAGCGCgGCcgccuCCAGCgcGGCGg -3' miRNA: 3'- -GCGCGa-GGUCGCGgCG-----GGUCGa-CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3582 | 0.69 | 0.324926 |
Target: 5'- gCGCGCUCCAccgcgucgcgggccGCGCCaagcaGCUCAGCUGcccggagcacGCGc -3' miRNA: 3'- -GCGCGAGGU--------------CGCGG-----CGGGUCGAC----------CGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3654 | 0.66 | 0.480699 |
Target: 5'- aGCGCgUCUggAGCGCagGCCgCGGCcGGCa -3' miRNA: 3'- gCGCG-AGG--UCGCGg-CGG-GUCGaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3668 | 0.82 | 0.037736 |
Target: 5'- uGCGCagCCgcGGCGCCGCCCAGCaaggGGCGg -3' miRNA: 3'- gCGCGa-GG--UCGCGGCGGGUCGa---CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3745 | 0.67 | 0.395128 |
Target: 5'- aGUGCagCAGCgcgacgacGCCGCCCAcgaUGGCGg -3' miRNA: 3'- gCGCGagGUCG--------CGGCGGGUcg-ACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3749 | 0.67 | 0.419772 |
Target: 5'- gGCGCaCC-GCGCCGCCUcuAGCgccucgcGGCa -3' miRNA: 3'- gCGCGaGGuCGCGGCGGG--UCGa------CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3840 | 0.78 | 0.07546 |
Target: 5'- gGCGCUggcggcagcggcgCCGGCGCCGCgCGGCcGGCGa -3' miRNA: 3'- gCGCGA-------------GGUCGCGGCGgGUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3852 | 0.68 | 0.340663 |
Target: 5'- -cCGCUCUcgccgucgccagcGGCGCCGCCCcccGCgcGGCGg -3' miRNA: 3'- gcGCGAGG-------------UCGCGGCGGGu--CGa-CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3916 | 0.71 | 0.217434 |
Target: 5'- cCGCGCcgCCGGCGCCgGCCUccggguaGGCcaugGGCGc -3' miRNA: 3'- -GCGCGa-GGUCGCGG-CGGG-------UCGa---CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3924 | 0.67 | 0.387124 |
Target: 5'- --aGCUCCAGCGCgGCgaaGGC-GGCGa -3' miRNA: 3'- gcgCGAGGUCGCGgCGgg-UCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 4137 | 0.66 | 0.471723 |
Target: 5'- aGCcCUgCAcGCGCCGCUgCAGCaGGCGc -3' miRNA: 3'- gCGcGAgGU-CGCGGCGG-GUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 4377 | 0.66 | 0.454033 |
Target: 5'- cCGCGCcgCCgaAGCGCacgcgGCCgGGCggcGGCGg -3' miRNA: 3'- -GCGCGa-GG--UCGCGg----CGGgUCGa--CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 4501 | 0.66 | 0.462834 |
Target: 5'- gGCGUugUCC-GCGCCGcCCCAGaCguagacGGCGc -3' miRNA: 3'- gCGCG--AGGuCGCGGC-GGGUC-Ga-----CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 4501 | 0.71 | 0.244709 |
Target: 5'- uGCGCgggccCCAGuCGCgCGCCCGcGCgGGCGc -3' miRNA: 3'- gCGCGa----GGUC-GCG-GCGGGU-CGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 4882 | 0.66 | 0.454033 |
Target: 5'- gGcCGCcUCAGCcgcgGCCGCCuCGGCUucGGCGg -3' miRNA: 3'- gC-GCGaGGUCG----CGGCGG-GUCGA--CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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