miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 115 0.78 0.073561
Target:  5'- cCGCccGCgCCGGCGCCGCCCcuggugcucgcggGGCUGGCa -3'
miRNA:   3'- -GCG--CGaGGUCGCGGCGGG-------------UCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 225 0.68 0.371438
Target:  5'- gGUGCUCgCGG-GCCccgcgagcggGCCCGGCUgcGGCGg -3'
miRNA:   3'- gCGCGAG-GUCgCGG----------CGGGUCGA--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 292 0.66 0.454033
Target:  5'- cCGcCGC-CgCAGcCGCCGCCgCAGCcgGGCc -3'
miRNA:   3'- -GC-GCGaG-GUC-GCGGCGG-GUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 349 0.78 0.073749
Target:  5'- cCGCaGC-CCGGCGCgGCCCGGC-GGCGg -3'
miRNA:   3'- -GCG-CGaGGUCGCGgCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 642 0.67 0.403239
Target:  5'- gGCgGCcgCCAGCGCCGCguccCCGGCgccgaguccUGGCc -3'
miRNA:   3'- gCG-CGa-GGUCGCGGCG----GGUCG---------ACCGc -5'
23571 3' -65.2 NC_005261.1 + 1082 0.67 0.403239
Target:  5'- -cCGCUCCAGgGCgaGCCCGGCUcGUc -3'
miRNA:   3'- gcGCGAGGUCgCGg-CGGGUCGAcCGc -5'
23571 3' -65.2 NC_005261.1 + 1178 0.66 0.462834
Target:  5'- cCGCGCcgcggCCGGgGCCgggGCCgGGCgcGGCGc -3'
miRNA:   3'- -GCGCGa----GGUCgCGG---CGGgUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 1199 0.67 0.395128
Target:  5'- cCGCcCUCCAccGaCGCCGUUCuGCUGGCc -3'
miRNA:   3'- -GCGcGAGGU--C-GCGGCGGGuCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 1322 0.7 0.276624
Target:  5'- aCGCGCUCCGGgaCGCCGCcgcgccgcgccugcaCCAGCgucucccgcgGGCc -3'
miRNA:   3'- -GCGCGAGGUC--GCGGCG---------------GGUCGa---------CCGc -5'
23571 3' -65.2 NC_005261.1 + 1466 0.68 0.36376
Target:  5'- uGCgGCUCCAGCagcgcgGCCGCgCAGaaGGCc -3'
miRNA:   3'- gCG-CGAGGUCG------CGGCGgGUCgaCCGc -5'
23571 3' -65.2 NC_005261.1 + 1524 0.72 0.198367
Target:  5'- gCGCcaGCUCCAgcgcGCGCCGCCC-GCaGGCc -3'
miRNA:   3'- -GCG--CGAGGU----CGCGGCGGGuCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 1625 0.66 0.454033
Target:  5'- gCGCGCgc--GCGCCGCuCCAcGCUGcGCc -3'
miRNA:   3'- -GCGCGagguCGCGGCG-GGU-CGAC-CGc -5'
23571 3' -65.2 NC_005261.1 + 1892 0.72 0.184708
Target:  5'- gCGCGCgCCAGCGCgCGCcgcucaggCCAGCgcgcGGCGc -3'
miRNA:   3'- -GCGCGaGGUCGCG-GCG--------GGUCGa---CCGC- -5'
23571 3' -65.2 NC_005261.1 + 2187 0.69 0.299694
Target:  5'- gGCGCUCagCAGCaGCCgguuGCCCAGCgccGCGa -3'
miRNA:   3'- gCGCGAG--GUCG-CGG----CGGGUCGac-CGC- -5'
23571 3' -65.2 NC_005261.1 + 2267 0.69 0.313141
Target:  5'- gGCGCUCguccucgccgggCGGCGCCGCC-AGCgccuccccgGGCa -3'
miRNA:   3'- gCGCGAG------------GUCGCGGCGGgUCGa--------CCGc -5'
23571 3' -65.2 NC_005261.1 + 2359 0.71 0.212899
Target:  5'- uGCGacaUCCAggccacGCGCCGCCgCAGC-GGCGc -3'
miRNA:   3'- gCGCg--AGGU------CGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 2405 0.66 0.480699
Target:  5'- gCGCGCccgCgGGCcCCGCgCGGC-GGCGg -3'
miRNA:   3'- -GCGCGa--GgUCGcGGCGgGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 2465 0.69 0.292491
Target:  5'- aCGCGCUCUgcgccggAGCGCacCGCgCGGCUgaGGCGc -3'
miRNA:   3'- -GCGCGAGG-------UCGCG--GCGgGUCGA--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 2673 0.71 0.238595
Target:  5'- cCGCGCUggggacCCGGCGgCGCgCCGGCUuuuggccGGCGc -3'
miRNA:   3'- -GCGCGA------GGUCGCgGCG-GGUCGA-------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 2789 0.7 0.268043
Target:  5'- aGCGC-CC-GCGCCGCCUGGgC-GGCGu -3'
miRNA:   3'- gCGCGaGGuCGCGGCGGGUC-GaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.