Results 1 - 20 of 952 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23571 | 3' | -65.2 | NC_005261.1 | + | 115 | 0.78 | 0.073561 |
Target: 5'- cCGCccGCgCCGGCGCCGCCCcuggugcucgcggGGCUGGCa -3' miRNA: 3'- -GCG--CGaGGUCGCGGCGGG-------------UCGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 225 | 0.68 | 0.371438 |
Target: 5'- gGUGCUCgCGG-GCCccgcgagcggGCCCGGCUgcGGCGg -3' miRNA: 3'- gCGCGAG-GUCgCGG----------CGGGUCGA--CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 292 | 0.66 | 0.454033 |
Target: 5'- cCGcCGC-CgCAGcCGCCGCCgCAGCcgGGCc -3' miRNA: 3'- -GC-GCGaG-GUC-GCGGCGG-GUCGa-CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 349 | 0.78 | 0.073749 |
Target: 5'- cCGCaGC-CCGGCGCgGCCCGGC-GGCGg -3' miRNA: 3'- -GCG-CGaGGUCGCGgCGGGUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 642 | 0.67 | 0.403239 |
Target: 5'- gGCgGCcgCCAGCGCCGCguccCCGGCgccgaguccUGGCc -3' miRNA: 3'- gCG-CGa-GGUCGCGGCG----GGUCG---------ACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 1082 | 0.67 | 0.403239 |
Target: 5'- -cCGCUCCAGgGCgaGCCCGGCUcGUc -3' miRNA: 3'- gcGCGAGGUCgCGg-CGGGUCGAcCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 1178 | 0.66 | 0.462834 |
Target: 5'- cCGCGCcgcggCCGGgGCCgggGCCgGGCgcGGCGc -3' miRNA: 3'- -GCGCGa----GGUCgCGG---CGGgUCGa-CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 1199 | 0.67 | 0.395128 |
Target: 5'- cCGCcCUCCAccGaCGCCGUUCuGCUGGCc -3' miRNA: 3'- -GCGcGAGGU--C-GCGGCGGGuCGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 1322 | 0.7 | 0.276624 |
Target: 5'- aCGCGCUCCGGgaCGCCGCcgcgccgcgccugcaCCAGCgucucccgcgGGCc -3' miRNA: 3'- -GCGCGAGGUC--GCGGCG---------------GGUCGa---------CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 1466 | 0.68 | 0.36376 |
Target: 5'- uGCgGCUCCAGCagcgcgGCCGCgCAGaaGGCc -3' miRNA: 3'- gCG-CGAGGUCG------CGGCGgGUCgaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 1524 | 0.72 | 0.198367 |
Target: 5'- gCGCcaGCUCCAgcgcGCGCCGCCC-GCaGGCc -3' miRNA: 3'- -GCG--CGAGGU----CGCGGCGGGuCGaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 1625 | 0.66 | 0.454033 |
Target: 5'- gCGCGCgc--GCGCCGCuCCAcGCUGcGCc -3' miRNA: 3'- -GCGCGagguCGCGGCG-GGU-CGAC-CGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 1892 | 0.72 | 0.184708 |
Target: 5'- gCGCGCgCCAGCGCgCGCcgcucaggCCAGCgcgcGGCGc -3' miRNA: 3'- -GCGCGaGGUCGCG-GCG--------GGUCGa---CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 2187 | 0.69 | 0.299694 |
Target: 5'- gGCGCUCagCAGCaGCCgguuGCCCAGCgccGCGa -3' miRNA: 3'- gCGCGAG--GUCG-CGG----CGGGUCGac-CGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 2267 | 0.69 | 0.313141 |
Target: 5'- gGCGCUCguccucgccgggCGGCGCCGCC-AGCgccuccccgGGCa -3' miRNA: 3'- gCGCGAG------------GUCGCGGCGGgUCGa--------CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 2359 | 0.71 | 0.212899 |
Target: 5'- uGCGacaUCCAggccacGCGCCGCCgCAGC-GGCGc -3' miRNA: 3'- gCGCg--AGGU------CGCGGCGG-GUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 2405 | 0.66 | 0.480699 |
Target: 5'- gCGCGCccgCgGGCcCCGCgCGGC-GGCGg -3' miRNA: 3'- -GCGCGa--GgUCGcGGCGgGUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 2465 | 0.69 | 0.292491 |
Target: 5'- aCGCGCUCUgcgccggAGCGCacCGCgCGGCUgaGGCGc -3' miRNA: 3'- -GCGCGAGG-------UCGCG--GCGgGUCGA--CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 2673 | 0.71 | 0.238595 |
Target: 5'- cCGCGCUggggacCCGGCGgCGCgCCGGCUuuuggccGGCGc -3' miRNA: 3'- -GCGCGA------GGUCGCgGCG-GGUCGA-------CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 2789 | 0.7 | 0.268043 |
Target: 5'- aGCGC-CC-GCGCCGCCUGGgC-GGCGu -3' miRNA: 3'- gCGCGaGGuCGCGGCGGGUC-GaCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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