miRNA display CGI


Results 1 - 20 of 952 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 118982 0.66 0.43671
Target:  5'- gCGCGCUguUCAGCGCCcCCgCAGuCUcGCGg -3'
miRNA:   3'- -GCGCGA--GGUCGCGGcGG-GUC-GAcCGC- -5'
23571 3' -65.2 NC_005261.1 + 74654 0.66 0.43671
Target:  5'- gCGcCGCUCUucgGGCccaucaugccgGCCGCgCCAGCgGGCa -3'
miRNA:   3'- -GC-GCGAGG---UCG-----------CGGCG-GGUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 37967 0.66 0.43671
Target:  5'- uGCGCcaCCGGCG-CGCCgacugggGGCUGGCa -3'
miRNA:   3'- gCGCGa-GGUCGCgGCGGg------UCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 110412 0.66 0.445324
Target:  5'- uCG-GCUggCUAGCucgGCCGgCCGGCUGGCu -3'
miRNA:   3'- -GCgCGA--GGUCG---CGGCgGGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 79213 0.66 0.43671
Target:  5'- -cCGUUCCuggcGGCGCCGCUgGGCgagcccGGCGc -3'
miRNA:   3'- gcGCGAGG----UCGCGGCGGgUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 93365 0.66 0.43671
Target:  5'- gGCGCUCgCGGCGgCGCUCuuccucgcGGCUG-CGg -3'
miRNA:   3'- gCGCGAG-GUCGCgGCGGG--------UCGACcGC- -5'
23571 3' -65.2 NC_005261.1 + 32858 0.66 0.434144
Target:  5'- gCGCGCacCCGcgcGCGCCGCCUgucacGGCcugccucacggccgUGGCGg -3'
miRNA:   3'- -GCGCGa-GGU---CGCGGCGGG-----UCG--------------ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 12349 0.66 0.44273
Target:  5'- gGCGCcuucagCCaagGGCGCCGcCCCGGCcgaguuugccgccuUGGCu -3'
miRNA:   3'- gCGCGa-----GG---UCGCGGC-GGGUCG--------------ACCGc -5'
23571 3' -65.2 NC_005261.1 + 34137 0.66 0.43671
Target:  5'- uCGCGCgg-AGCGCCGCCgCccuguccgccgAGCUGGaCGc -3'
miRNA:   3'- -GCGCGaggUCGCGGCGG-G-----------UCGACC-GC- -5'
23571 3' -65.2 NC_005261.1 + 51135 0.66 0.43671
Target:  5'- cCGCGCUCUGcGCGCUGCUgcaCGGCUacgugcugGGCc -3'
miRNA:   3'- -GCGCGAGGU-CGCGGCGG---GUCGA--------CCGc -5'
23571 3' -65.2 NC_005261.1 + 119799 0.66 0.43671
Target:  5'- aCGCGCUgcCCGGCGaggaCGUCUGcGCUGGgGu -3'
miRNA:   3'- -GCGCGA--GGUCGCg---GCGGGU-CGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 136666 0.66 0.445324
Target:  5'- gGgGCUCgGcGCGCCGCUgCGGCcGGUGu -3'
miRNA:   3'- gCgCGAGgU-CGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 42905 0.66 0.44273
Target:  5'- cCGUGUUCUgacccggacguaggGGuCGCaguccgucugCGCCCAGCUGGCc -3'
miRNA:   3'- -GCGCGAGG--------------UC-GCG----------GCGGGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 83457 0.66 0.43671
Target:  5'- gCGCGCcgUCCuGuCGcCCGCCgCA-CUGGCGg -3'
miRNA:   3'- -GCGCG--AGGuC-GC-GGCGG-GUcGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 19315 0.66 0.43671
Target:  5'- cCGCGCcCgCGGCGCCGgaCCCAGaCgcaGGCc -3'
miRNA:   3'- -GCGCGaG-GUCGCGGC--GGGUC-Ga--CCGc -5'
23571 3' -65.2 NC_005261.1 + 73075 0.66 0.43671
Target:  5'- aGCGCaCCuucugcGCGCUGgCgCGGCUGGUGa -3'
miRNA:   3'- gCGCGaGGu-----CGCGGCgG-GUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 53577 0.66 0.43671
Target:  5'- gGCGCgggCGGCGCCaGCCgGgacaacacGCUGGUGg -3'
miRNA:   3'- gCGCGag-GUCGCGG-CGGgU--------CGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 29183 0.66 0.43671
Target:  5'- uGgGCUaCCuGGCgGCCGCgCGGCUGcGCGc -3'
miRNA:   3'- gCgCGA-GG-UCG-CGGCGgGUCGAC-CGC- -5'
23571 3' -65.2 NC_005261.1 + 72827 0.66 0.440144
Target:  5'- aCGUggaGCUgCCGGgGCCGCCCAacccccgcagguaauGCcgGGCGu -3'
miRNA:   3'- -GCG---CGA-GGUCgCGGCGGGU---------------CGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 91243 0.66 0.43671
Target:  5'- gGCGCggCGcGCGCUG-CCGGCgGGCGg -3'
miRNA:   3'- gCGCGagGU-CGCGGCgGGUCGaCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.