Results 1 - 20 of 952 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23571 | 3' | -65.2 | NC_005261.1 | + | 118982 | 0.66 | 0.43671 |
Target: 5'- gCGCGCUguUCAGCGCCcCCgCAGuCUcGCGg -3' miRNA: 3'- -GCGCGA--GGUCGCGGcGG-GUC-GAcCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 74654 | 0.66 | 0.43671 |
Target: 5'- gCGcCGCUCUucgGGCccaucaugccgGCCGCgCCAGCgGGCa -3' miRNA: 3'- -GC-GCGAGG---UCG-----------CGGCG-GGUCGaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 37967 | 0.66 | 0.43671 |
Target: 5'- uGCGCcaCCGGCG-CGCCgacugggGGCUGGCa -3' miRNA: 3'- gCGCGa-GGUCGCgGCGGg------UCGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 110412 | 0.66 | 0.445324 |
Target: 5'- uCG-GCUggCUAGCucgGCCGgCCGGCUGGCu -3' miRNA: 3'- -GCgCGA--GGUCG---CGGCgGGUCGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 79213 | 0.66 | 0.43671 |
Target: 5'- -cCGUUCCuggcGGCGCCGCUgGGCgagcccGGCGc -3' miRNA: 3'- gcGCGAGG----UCGCGGCGGgUCGa-----CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 93365 | 0.66 | 0.43671 |
Target: 5'- gGCGCUCgCGGCGgCGCUCuuccucgcGGCUG-CGg -3' miRNA: 3'- gCGCGAG-GUCGCgGCGGG--------UCGACcGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 32858 | 0.66 | 0.434144 |
Target: 5'- gCGCGCacCCGcgcGCGCCGCCUgucacGGCcugccucacggccgUGGCGg -3' miRNA: 3'- -GCGCGa-GGU---CGCGGCGGG-----UCG--------------ACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 12349 | 0.66 | 0.44273 |
Target: 5'- gGCGCcuucagCCaagGGCGCCGcCCCGGCcgaguuugccgccuUGGCu -3' miRNA: 3'- gCGCGa-----GG---UCGCGGC-GGGUCG--------------ACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 34137 | 0.66 | 0.43671 |
Target: 5'- uCGCGCgg-AGCGCCGCCgCccuguccgccgAGCUGGaCGc -3' miRNA: 3'- -GCGCGaggUCGCGGCGG-G-----------UCGACC-GC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 51135 | 0.66 | 0.43671 |
Target: 5'- cCGCGCUCUGcGCGCUGCUgcaCGGCUacgugcugGGCc -3' miRNA: 3'- -GCGCGAGGU-CGCGGCGG---GUCGA--------CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 119799 | 0.66 | 0.43671 |
Target: 5'- aCGCGCUgcCCGGCGaggaCGUCUGcGCUGGgGu -3' miRNA: 3'- -GCGCGA--GGUCGCg---GCGGGU-CGACCgC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 136666 | 0.66 | 0.445324 |
Target: 5'- gGgGCUCgGcGCGCCGCUgCGGCcGGUGu -3' miRNA: 3'- gCgCGAGgU-CGCGGCGG-GUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 42905 | 0.66 | 0.44273 |
Target: 5'- cCGUGUUCUgacccggacguaggGGuCGCaguccgucugCGCCCAGCUGGCc -3' miRNA: 3'- -GCGCGAGG--------------UC-GCG----------GCGGGUCGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 83457 | 0.66 | 0.43671 |
Target: 5'- gCGCGCcgUCCuGuCGcCCGCCgCA-CUGGCGg -3' miRNA: 3'- -GCGCG--AGGuC-GC-GGCGG-GUcGACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 19315 | 0.66 | 0.43671 |
Target: 5'- cCGCGCcCgCGGCGCCGgaCCCAGaCgcaGGCc -3' miRNA: 3'- -GCGCGaG-GUCGCGGC--GGGUC-Ga--CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 73075 | 0.66 | 0.43671 |
Target: 5'- aGCGCaCCuucugcGCGCUGgCgCGGCUGGUGa -3' miRNA: 3'- gCGCGaGGu-----CGCGGCgG-GUCGACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 53577 | 0.66 | 0.43671 |
Target: 5'- gGCGCgggCGGCGCCaGCCgGgacaacacGCUGGUGg -3' miRNA: 3'- gCGCGag-GUCGCGG-CGGgU--------CGACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 29183 | 0.66 | 0.43671 |
Target: 5'- uGgGCUaCCuGGCgGCCGCgCGGCUGcGCGc -3' miRNA: 3'- gCgCGA-GG-UCG-CGGCGgGUCGAC-CGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 72827 | 0.66 | 0.440144 |
Target: 5'- aCGUggaGCUgCCGGgGCCGCCCAacccccgcagguaauGCcgGGCGu -3' miRNA: 3'- -GCG---CGA-GGUCgCGGCGGGU---------------CGa-CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 91243 | 0.66 | 0.43671 |
Target: 5'- gGCGCggCGcGCGCUG-CCGGCgGGCGg -3' miRNA: 3'- gCGCGagGU-CGCGGCgGGUCGaCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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