miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 121974 1.08 0.000403
Target:  5'- cCGCGCUCCAGCGCCGCCCAGCUGGCGg -3'
miRNA:   3'- -GCGCGAGGUCGCGGCGGGUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 41118 0.86 0.020695
Target:  5'- gGCGcCUCCGGcCGCgGCCCGGCUGGCGc -3'
miRNA:   3'- gCGC-GAGGUC-GCGgCGGGUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 82375 0.86 0.018633
Target:  5'- gCGCGCgccgCCAGCGCCGCCCAGCccgcggGGCc -3'
miRNA:   3'- -GCGCGa---GGUCGCGGCGGGUCGa-----CCGc -5'
23571 3' -65.2 NC_005261.1 + 51773 0.84 0.028331
Target:  5'- gGCGCUggCCGGCGUCGCCCuGCUGGCc -3'
miRNA:   3'- gCGCGA--GGUCGCGGCGGGuCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 3668 0.82 0.037736
Target:  5'- uGCGCagCCgcGGCGCCGCCCAGCaaggGGCGg -3'
miRNA:   3'- gCGCGa-GG--UCGCGGCGGGUCGa---CCGC- -5'
23571 3' -65.2 NC_005261.1 + 31167 0.81 0.044093
Target:  5'- cCGCGC-CCAGCGCCGCggcGCUGGCGg -3'
miRNA:   3'- -GCGCGaGGUCGCGGCGgguCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 109235 0.81 0.042965
Target:  5'- gCGCGCUgCAGCGCgGCCCAGUgcggGGCc -3'
miRNA:   3'- -GCGCGAgGUCGCGgCGGGUCGa---CCGc -5'
23571 3' -65.2 NC_005261.1 + 42913 0.81 0.044093
Target:  5'- gGCGCUCCGGgGCCGCCgGGCgagugGGUGc -3'
miRNA:   3'- gCGCGAGGUCgCGGCGGgUCGa----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 28583 0.81 0.046436
Target:  5'- gCGCGCgagcgCCGGCggGCCGCCCgcgccgAGCUGGCGg -3'
miRNA:   3'- -GCGCGa----GGUCG--CGGCGGG------UCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 133100 0.81 0.046436
Target:  5'- gCGCGCgagcgCCGGCggGCCGCCCgcgccgAGCUGGCGg -3'
miRNA:   3'- -GCGCGa----GGUCG--CGGCGGG------UCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 135685 0.81 0.044093
Target:  5'- cCGCGC-CCAGCGCCGCggcGCUGGCGg -3'
miRNA:   3'- -GCGCGaGGUCGCGGCGgguCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 78505 0.8 0.055632
Target:  5'- cCGCGCgccgCCGcUGCCGCCCGGCgGGCGg -3'
miRNA:   3'- -GCGCGa---GGUcGCGGCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 12691 0.79 0.05857
Target:  5'- gGC-CUCUGGCGCCGCCCuGCgGGCGg -3'
miRNA:   3'- gCGcGAGGUCGCGGCGGGuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 68700 0.79 0.05857
Target:  5'- gCGCGCgcgCCAGCGcCCGCgCCAGCUccGGCa -3'
miRNA:   3'- -GCGCGa--GGUCGC-GGCG-GGUCGA--CCGc -5'
23571 3' -65.2 NC_005261.1 + 41040 0.79 0.066585
Target:  5'- gGCGCuUCCGGcCGCgGCCCGGCcGGCGc -3'
miRNA:   3'- gCGCG-AGGUC-GCGgCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 110930 0.79 0.061657
Target:  5'- cCGCGCUgggcaCCgAGCGCCGCCCGGC-GGCc -3'
miRNA:   3'- -GCGCGA-----GG-UCGCGGCGGGUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 63053 0.79 0.061657
Target:  5'- uCGCGCagCAGCGCCGCgUcGCUGGCGc -3'
miRNA:   3'- -GCGCGagGUCGCGGCGgGuCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 50055 0.78 0.073749
Target:  5'- gGCGCcgCCGGCGUCGCCCcggcccGGCUGcGCGg -3'
miRNA:   3'- gCGCGa-GGUCGCGGCGGG------UCGAC-CGC- -5'
23571 3' -65.2 NC_005261.1 + 104866 0.78 0.073749
Target:  5'- cCGCaGC-CCGGCGCgGCCCGGC-GGCGg -3'
miRNA:   3'- -GCG-CGaGGUCGCGgCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 108357 0.78 0.07546
Target:  5'- gGCGCUggcggcagcggcgCCGGCGCCGCgCGGCcGGCGa -3'
miRNA:   3'- gCGCGA-------------GGUCGCGGCGgGUCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.