miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 78432 0.66 0.454033
Target:  5'- gGCGCcacgCCGGCcuGCCGCCCGccgccgucGCUG-CGg -3'
miRNA:   3'- gCGCGa---GGUCG--CGGCGGGU--------CGACcGC- -5'
23571 3' -65.2 NC_005261.1 + 118982 0.66 0.43671
Target:  5'- gCGCGCUguUCAGCGCCcCCgCAGuCUcGCGg -3'
miRNA:   3'- -GCGCGA--GGUCGCGGcGG-GUC-GAcCGC- -5'
23571 3' -65.2 NC_005261.1 + 136666 0.66 0.445324
Target:  5'- gGgGCUCgGcGCGCCGCUgCGGCcGGUGu -3'
miRNA:   3'- gCgCGAGgU-CGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 37967 0.66 0.43671
Target:  5'- uGCGCcaCCGGCG-CGCCgacugggGGCUGGCa -3'
miRNA:   3'- gCGCGa-GGUCGCgGCGGg------UCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 119799 0.66 0.43671
Target:  5'- aCGCGCUgcCCGGCGaggaCGUCUGcGCUGGgGu -3'
miRNA:   3'- -GCGCGA--GGUCGCg---GCGGGU-CGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 70891 0.66 0.454033
Target:  5'- gCGgGC-CCGGCGCUGUUCcugcGGCUGaGCGc -3'
miRNA:   3'- -GCgCGaGGUCGCGGCGGG----UCGAC-CGC- -5'
23571 3' -65.2 NC_005261.1 + 54915 0.66 0.454033
Target:  5'- gGCGU---GGCGCCGCCCgAGCUG-Ca -3'
miRNA:   3'- gCGCGaggUCGCGGCGGG-UCGACcGc -5'
23571 3' -65.2 NC_005261.1 + 28776 0.66 0.445324
Target:  5'- aCGCGCgaagCgGGgGuuGCCUcuCUGGCGg -3'
miRNA:   3'- -GCGCGa---GgUCgCggCGGGucGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 91243 0.66 0.43671
Target:  5'- gGCGCggCGcGCGCUG-CCGGCgGGCGg -3'
miRNA:   3'- gCGCGagGU-CGCGGCgGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 19315 0.66 0.43671
Target:  5'- cCGCGCcCgCGGCGCCGgaCCCAGaCgcaGGCc -3'
miRNA:   3'- -GCGCGaG-GUCGCGGC--GGGUC-Ga--CCGc -5'
23571 3' -65.2 NC_005261.1 + 19640 0.66 0.445324
Target:  5'- gCGCgaGCUCCGcggcggcggcgcGCGCCGCCgCGcGCgcgGGCa -3'
miRNA:   3'- -GCG--CGAGGU------------CGCGGCGG-GU-CGa--CCGc -5'
23571 3' -65.2 NC_005261.1 + 57375 0.66 0.454033
Target:  5'- aGCGCgCCuGgGgUGCgCGGCUGGCa -3'
miRNA:   3'- gCGCGaGGuCgCgGCGgGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 109399 0.66 0.454033
Target:  5'- gGcCGCcUCAGCcgcgGCCGCCuCGGCUucGGCGg -3'
miRNA:   3'- gC-GCGaGGUCG----CGGCGG-GUCGA--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 32858 0.66 0.434144
Target:  5'- gCGCGCacCCGcgcGCGCCGCCUgucacGGCcugccucacggccgUGGCGg -3'
miRNA:   3'- -GCGCGa-GGU---CGCGGCGGG-----UCG--------------ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 71517 0.66 0.454033
Target:  5'- aGCGCaucaaCCGGCGCuCGCUgAGCgcGGCc -3'
miRNA:   3'- gCGCGa----GGUCGCG-GCGGgUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 78622 0.66 0.445324
Target:  5'- gGCGCUCauccgccGCGCCGCggaGGUggUGGCGg -3'
miRNA:   3'- gCGCGAGgu-----CGCGGCGgg-UCG--ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 110412 0.66 0.445324
Target:  5'- uCG-GCUggCUAGCucgGCCGgCCGGCUGGCu -3'
miRNA:   3'- -GCgCGA--GGUCG---CGGCgGGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 74654 0.66 0.43671
Target:  5'- gCGcCGCUCUucgGGCccaucaugccgGCCGCgCCAGCgGGCa -3'
miRNA:   3'- -GC-GCGAGG---UCG-----------CGGCG-GGUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 93365 0.66 0.43671
Target:  5'- gGCGCUCgCGGCGgCGCUCuuccucgcGGCUG-CGg -3'
miRNA:   3'- gCGCGAG-GUCGCgGCGGG--------UCGACcGC- -5'
23571 3' -65.2 NC_005261.1 + 42905 0.66 0.44273
Target:  5'- cCGUGUUCUgacccggacguaggGGuCGCaguccgucugCGCCCAGCUGGCc -3'
miRNA:   3'- -GCGCGAGG--------------UC-GCG----------GCGGGUCGACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.