miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 109399 0.66 0.454033
Target:  5'- gGcCGCcUCAGCcgcgGCCGCCuCGGCUucGGCGg -3'
miRNA:   3'- gC-GCGaGGUCG----CGGCGG-GUCGA--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 51135 0.66 0.43671
Target:  5'- cCGCGCUCUGcGCGCUGCUgcaCGGCUacgugcugGGCc -3'
miRNA:   3'- -GCGCGAGGU-CGCGGCGG---GUCGA--------CCGc -5'
23571 3' -65.2 NC_005261.1 + 73075 0.66 0.43671
Target:  5'- aGCGCaCCuucugcGCGCUGgCgCGGCUGGUGa -3'
miRNA:   3'- gCGCGaGGu-----CGCGGCgG-GUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 78891 0.66 0.445324
Target:  5'- gGCGa--CGGCGgCGaCCCGGCgGGCGc -3'
miRNA:   3'- gCGCgagGUCGCgGC-GGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 83457 0.66 0.43671
Target:  5'- gCGCGCcgUCCuGuCGcCCGCCgCA-CUGGCGg -3'
miRNA:   3'- -GCGCG--AGGuC-GC-GGCGG-GUcGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 57375 0.66 0.454033
Target:  5'- aGCGCgCCuGgGgUGCgCGGCUGGCa -3'
miRNA:   3'- gCGCGaGGuCgCgGCGgGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 54915 0.66 0.454033
Target:  5'- gGCGU---GGCGCCGCCCgAGCUG-Ca -3'
miRNA:   3'- gCGCGaggUCGCGGCGGG-UCGACcGc -5'
23571 3' -65.2 NC_005261.1 + 93365 0.66 0.43671
Target:  5'- gGCGCUCgCGGCGgCGCUCuuccucgcGGCUG-CGg -3'
miRNA:   3'- gCGCGAG-GUCGCgGCGGG--------UCGACcGC- -5'
23571 3' -65.2 NC_005261.1 + 110412 0.66 0.445324
Target:  5'- uCG-GCUggCUAGCucgGCCGgCCGGCUGGCu -3'
miRNA:   3'- -GCgCGA--GGUCG---CGGCgGGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 90205 0.66 0.445324
Target:  5'- gCGUGCUCCucGCcCUGCUCuGCcGGCGg -3'
miRNA:   3'- -GCGCGAGGu-CGcGGCGGGuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 12349 0.66 0.44273
Target:  5'- gGCGCcuucagCCaagGGCGCCGcCCCGGCcgaguuugccgccuUGGCu -3'
miRNA:   3'- gCGCGa-----GG---UCGCGGC-GGGUCG--------------ACCGc -5'
23571 3' -65.2 NC_005261.1 + 77180 0.66 0.454033
Target:  5'- aGUGCUCCAG-GCCcaGCaccagCCAGCUGccGCGg -3'
miRNA:   3'- gCGCGAGGUCgCGG--CG-----GGUCGAC--CGC- -5'
23571 3' -65.2 NC_005261.1 + 20164 0.66 0.454033
Target:  5'- gCGCgGCUgCGGCcgcuGCCGCggccgCCAGCgcgGGCGu -3'
miRNA:   3'- -GCG-CGAgGUCG----CGGCG-----GGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 78622 0.66 0.445324
Target:  5'- gGCGCUCauccgccGCGCCGCggaGGUggUGGCGg -3'
miRNA:   3'- gCGCGAGgu-----CGCGGCGgg-UCG--ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 79213 0.66 0.43671
Target:  5'- -cCGUUCCuggcGGCGCCGCUgGGCgagcccGGCGc -3'
miRNA:   3'- gcGCGAGG----UCGCGGCGGgUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 79970 0.66 0.445324
Target:  5'- aGCGCggCgAGCGCgGCgCGGCgcGGCa -3'
miRNA:   3'- gCGCGa-GgUCGCGgCGgGUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 78432 0.66 0.454033
Target:  5'- gGCGCcacgCCGGCcuGCCGCCCGccgccgucGCUG-CGg -3'
miRNA:   3'- gCGCGa---GGUCG--CGGCGGGU--------CGACcGC- -5'
23571 3' -65.2 NC_005261.1 + 39213 0.66 0.454033
Target:  5'- gCGCGCgCCGccGCGCCGCC--GCUcGCGa -3'
miRNA:   3'- -GCGCGaGGU--CGCGGCGGguCGAcCGC- -5'
23571 3' -65.2 NC_005261.1 + 133698 0.66 0.454033
Target:  5'- aGgGC-CCGGCGCCcucgccgcggcGCCCGcGCggGGCGc -3'
miRNA:   3'- gCgCGaGGUCGCGG-----------CGGGU-CGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 70891 0.66 0.454033
Target:  5'- gCGgGC-CCGGCGCUGUUCcugcGGCUGaGCGc -3'
miRNA:   3'- -GCgCGaGGUCGCGGCGGG----UCGAC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.