miRNA display CGI


Results 1 - 20 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 138020 0.78 0.073749
Target:  5'- cCGCaGC-CCGGCGCgGCCCGGC-GGCGg -3'
miRNA:   3'- -GCG-CGaGGUCGCGgCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 137975 0.66 0.454033
Target:  5'- cCGcCGC-CgCAGcCGCCGCCgCAGCcgGGCc -3'
miRNA:   3'- -GC-GCGaG-GUC-GCGGCGG-GUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 137908 0.68 0.371438
Target:  5'- gGUGCUCgCGG-GCCccgcgagcggGCCCGGCUgcGGCGg -3'
miRNA:   3'- gCGCGAG-GUCgCGG----------CGGGUCGA--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 137798 0.78 0.073561
Target:  5'- cCGCccGCgCCGGCGCCGCCCcuggugcucgcggGGCUGGCa -3'
miRNA:   3'- -GCG--CGaGGUCGCGGCGGG-------------UCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 137043 0.68 0.341391
Target:  5'- cCGCGC-CCGGCcCCGgcCCCGGCcgcGGCGc -3'
miRNA:   3'- -GCGCGaGGUCGcGGC--GGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 136835 0.68 0.356192
Target:  5'- cCGcCGCggCC-GCGgCGCCCGGCgUGGCc -3'
miRNA:   3'- -GC-GCGa-GGuCGCgGCGGGUCG-ACCGc -5'
23571 3' -65.2 NC_005261.1 + 136769 0.69 0.295748
Target:  5'- cCGCGCUgCUggagccgcacgccgaGGCGCCGCC--GCUGGUGc -3'
miRNA:   3'- -GCGCGA-GG---------------UCGCGGCGGguCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 136666 0.66 0.445324
Target:  5'- gGgGCUCgGcGCGCCGCUgCGGCcGGUGu -3'
miRNA:   3'- gCgCGAGgU-CGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 136424 0.67 0.401608
Target:  5'- gCGCgGCUCUaccccggGGCGCCGCCgcugCGGCUcugccgcGGCGc -3'
miRNA:   3'- -GCG-CGAGG-------UCGCGGCGG----GUCGA-------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 136345 0.78 0.079601
Target:  5'- gCGCGCgCUGGCGCgCGCCguGCUGGCc -3'
miRNA:   3'- -GCGCGaGGUCGCG-GCGGguCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 136294 0.69 0.313141
Target:  5'- gCGCGC-CgCGGUGCUGCCC-GC-GGCGc -3'
miRNA:   3'- -GCGCGaG-GUCGCGGCGGGuCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 136097 0.66 0.471723
Target:  5'- gGCGCgCCGGacgugaGCgCGCUCGGCgcgcagGGCGu -3'
miRNA:   3'- gCGCGaGGUCg-----CG-GCGGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 135952 0.78 0.078796
Target:  5'- gGCGCUggCGGCGCCGCCCGGCgaggacgagcgccGGCGg -3'
miRNA:   3'- gCGCGAg-GUCGCGGCGGGUCGa------------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 135843 0.69 0.286698
Target:  5'- gCGCGCUcgccgCCAgcGCGCCGCUgCGGC-GGCGc -3'
miRNA:   3'- -GCGCGA-----GGU--CGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 135771 0.71 0.226225
Target:  5'- gGCGC-CCGGCGCuCGCCUucgaccccgaggcGCUGGCc -3'
miRNA:   3'- gCGCGaGGUCGCG-GCGGGu------------CGACCGc -5'
23571 3' -65.2 NC_005261.1 + 135767 0.68 0.348736
Target:  5'- uGCGCUCCGGCGCagaGCgCGugccGCUGuCGg -3'
miRNA:   3'- gCGCGAGGUCGCGg--CGgGU----CGACcGC- -5'
23571 3' -65.2 NC_005261.1 + 135685 0.81 0.044093
Target:  5'- cCGCGC-CCAGCGCCGCggcGCUGGCGg -3'
miRNA:   3'- -GCGCGaGGUCGCGGCGgguCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 135604 0.68 0.341391
Target:  5'- gCGUGCUgggccCCA-UGCCGCCCGGC-GGCc -3'
miRNA:   3'- -GCGCGA-----GGUcGCGGCGGGUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 135558 0.66 0.480699
Target:  5'- nGCGCcgCCGG-GUC-CCCAGCgcGGCGg -3'
miRNA:   3'- gCGCGa-GGUCgCGGcGGGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 135532 0.69 0.313141
Target:  5'- gGgGC-CCGGCGCCgGCCaaaAGCcGGCGc -3'
miRNA:   3'- gCgCGaGGUCGCGG-CGGg--UCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.