miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 135432 0.74 0.134719
Target:  5'- uGCGCUCgCA-CGCCGCCCAGgC-GGCGc -3'
miRNA:   3'- gCGCGAG-GUcGCGGCGGGUC-GaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 135393 0.67 0.403239
Target:  5'- gGgGCcgCCGGCccuGCCGCCCgAGCUcgGGCu -3'
miRNA:   3'- gCgCGa-GGUCG---CGGCGGG-UCGA--CCGc -5'
23571 3' -65.2 NC_005261.1 + 135301 0.68 0.356192
Target:  5'- cCGCGCgaCCGGCGUguCGCCCug--GGCGg -3'
miRNA:   3'- -GCGCGa-GGUCGCG--GCGGGucgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 135072 0.68 0.334159
Target:  5'- cCGCuuUCCGGCggcgggcucGCgGCCCGGC-GGCGg -3'
miRNA:   3'- -GCGcgAGGUCG---------CGgCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 134866 0.67 0.384743
Target:  5'- cCGCGCUcgcggcccugaaggCCGGCGCgccgggCGCCgCGGCgcgGGUGg -3'
miRNA:   3'- -GCGCGA--------------GGUCGCG------GCGG-GUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 134821 0.73 0.179051
Target:  5'- gCGCGCUCuuCAGCccgccggcggaaguGCCGgCgCGGCUGGCGg -3'
miRNA:   3'- -GCGCGAG--GUCG--------------CGGCgG-GUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 134784 0.66 0.471723
Target:  5'- gGCGCggcggcCCGcGCGcCCGCCUggacGCUGGCc -3'
miRNA:   3'- gCGCGa-----GGU-CGC-GGCGGGu---CGACCGc -5'
23571 3' -65.2 NC_005261.1 + 134734 0.7 0.27415
Target:  5'- cCGCGCUggCGGCGCgaaccgugGCCCcGCUGGCGc -3'
miRNA:   3'- -GCGCGAg-GUCGCGg-------CGGGuCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 134667 0.67 0.411454
Target:  5'- gCGCGCgcgCCuuagcGGCGCCgcGCCCGccgcGCUGcGCGc -3'
miRNA:   3'- -GCGCGa--GG-----UCGCGG--CGGGU----CGAC-CGC- -5'
23571 3' -65.2 NC_005261.1 + 134618 0.66 0.480699
Target:  5'- gCGUGCUCCGG-GCaGCUgAGCugcuUGGCGc -3'
miRNA:   3'- -GCGCGAGGUCgCGgCGGgUCG----ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 134584 0.68 0.341391
Target:  5'- uGCGCUCCAGa--CGCgCUAGC-GGCGc -3'
miRNA:   3'- gCGCGAGGUCgcgGCG-GGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 134500 0.71 0.244709
Target:  5'- uGCGCcgCCGGCG-CGUCCGGCagcGGCGc -3'
miRNA:   3'- gCGCGa-GGUCGCgGCGGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 134461 0.66 0.454033
Target:  5'- uGCGCUgCGGCcuGCCGCgaGGCgcuagaGGCGg -3'
miRNA:   3'- gCGCGAgGUCG--CGGCGggUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 134427 0.71 0.223088
Target:  5'- aGCGCgCgAGCgGCUGCgCgAGCUGGCGg -3'
miRNA:   3'- gCGCGaGgUCG-CGGCG-GgUCGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 134425 0.68 0.370666
Target:  5'- uGCuGCUCCA-CGCUGCUCGcggggcuGCUGGUGa -3'
miRNA:   3'- gCG-CGAGGUcGCGGCGGGU-------CGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 134382 0.76 0.09503
Target:  5'- cCGCGCggcgCCGGCGCCGCugccgCCAGCgcccgGGCc -3'
miRNA:   3'- -GCGCGa---GGUCGCGGCG-----GGUCGa----CCGc -5'
23571 3' -65.2 NC_005261.1 + 134346 0.67 0.392716
Target:  5'- cCGCaaGCcCCcGCGCCGCCgCGcggggggcggcgccGCUGGCGa -3'
miRNA:   3'- -GCG--CGaGGuCGCGGCGG-GU--------------CGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 134338 0.7 0.280368
Target:  5'- gGCGC-CCGcgccGCGCuCGCCgAGCUGcGCGc -3'
miRNA:   3'- gCGCGaGGU----CGCG-GCGGgUCGAC-CGC- -5'
23571 3' -65.2 NC_005261.1 + 134292 0.66 0.43671
Target:  5'- gGCGUgggUCCAcGuCGCCGCCUucgccgcgcuggAGCUGGUc -3'
miRNA:   3'- gCGCG---AGGU-C-GCGGCGGG------------UCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 134195 0.7 0.280368
Target:  5'- aCGCGCUgUgGGCGCUGCCgCAcgUGGCGg -3'
miRNA:   3'- -GCGCGA-GgUCGCGGCGG-GUcgACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.