miRNA display CGI

Results 41 - 60 of 952 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23571	3'	-65.2	NC_005261.1	+	133834	0.72	0.192801
	Target:  5'- aGCGCgCCGcCGCCGCCCGGCcgcgugcgcuucGGCGg -3' miRNA:   3'- gCGCGaGGUcGCGGCGGGUCGa-----------CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	133707	0.72	0.189166
	Target:  5'- uGCGCgaccCCGGCGCCGUCUAcGUcggGGCGg -3' miRNA:   3'- gCGCGa---GGUCGCGGCGGGU-CGa--CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	133698	0.66	0.454033
	Target:  5'- aGgGC-CCGGCGCCcucgccgcggcGCCCGcGCggGGCGc -3' miRNA:   3'- gCgCGaGGUCGCGG-----------CGGGU-CGa-CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	133671	0.66	0.454033
	Target:  5'- uCGC-CUCCGGCGCCaacggcucGCUCcGCUGGg- -3' miRNA:   3'- -GCGcGAGGUCGCGG--------CGGGuCGACCgc -5'
23571	3'	-65.2	NC_005261.1	+	133590	0.72	0.207467
	Target:  5'- cCGCGCU--GGCGCUGCUCAcggcccaccucgcGCUGGCGc -3' miRNA:   3'- -GCGCGAggUCGCGGCGGGU-------------CGACCGC- -5'
23571	3'	-65.2	NC_005261.1	+	133545	0.67	0.419772
	Target:  5'- gCGCGCagCgCAGCauGCUGCUCGGggGGCGg -3' miRNA:   3'- -GCGCGa-G-GUCG--CGGCGGGUCgaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	133383	0.69	0.322823
	Target:  5'- gCGCGCggcCCAcgggcGCGCgGCCCAaaacaaggcccgcucGCUGGUGu -3' miRNA:   3'- -GCGCGa--GGU-----CGCGgCGGGU---------------CGACCGC- -5'
23571	3'	-65.2	NC_005261.1	+	133309	0.66	0.470831
	Target:  5'- gGCGCUCgCGGCcgcggcggaggcaGCCGCCgccgaAGCcgaGGCGg -3' miRNA:   3'- gCGCGAG-GUCG-------------CGGCGGg----UCGa--CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	133100	0.81	0.046436
	Target:  5'- gCGCGCgagcgCCGGCggGCCGCCCgcgccgAGCUGGCGg -3' miRNA:   3'- -GCGCGa----GGUCG--CGGCGGG------UCGACCGC- -5'
23571	3'	-65.2	NC_005261.1	+	133033	0.67	0.428191
	Target:  5'- gGCGCgCCAccGCGCaCGCaCguGCUGcGCGg -3' miRNA:   3'- gCGCGaGGU--CGCG-GCG-GguCGAC-CGC- -5'
23571	3'	-65.2	NC_005261.1	+	132901	0.69	0.29314
	Target:  5'- gGCGCcgCgGGCGgCGCCgAGC-GGCGg -3' miRNA:   3'- gCGCGa-GgUCGCgGCGGgUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	132678	0.69	0.29314
	Target:  5'- cCGcCGCUCgGGCGCCcCCCGucucGCUGcGCGc -3' miRNA:   3'- -GC-GCGAGgUCGCGGcGGGU----CGAC-CGC- -5'
23571	3'	-65.2	NC_005261.1	+	132587	0.7	0.256158
	Target:  5'- gGCGCgCCcGCGgaCGCCCGGCccGGCGa -3' miRNA:   3'- gCGCGaGGuCGCg-GCGGGUCGa-CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	132378	0.66	0.469048
	Target:  5'- cCGCGCUCgCGGCGCUGuucCCCGaggccgccgccgacGcCUGGCc -3' miRNA:   3'- -GCGCGAG-GUCGCGGC---GGGU--------------C-GACCGc -5'
23571	3'	-65.2	NC_005261.1	+	132132	0.67	0.382372
	Target:  5'- aCGCGCggcugaccgcccuccUCCucgagcGCGCCGCCgcugcaggCAGCgcgGGCGg -3' miRNA:   3'- -GCGCG---------------AGGu-----CGCGGCGG--------GUCGa--CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	131727	0.66	0.44273
	Target:  5'- gCGCGCUUCggugGGUGCUGCacgcggacggcacgCCGGCcGGCGc -3' miRNA:   3'- -GCGCGAGG----UCGCGGCG--------------GGUCGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	131439	0.68	0.371438
	Target:  5'- gGCGCcCCccuuGCGCCGCgCCucGCgGGCGc -3' miRNA:   3'- gCGCGaGGu---CGCGGCG-GGu-CGaCCGC- -5'
23571	3'	-65.2	NC_005261.1	+	130840	0.75	0.125099
	Target:  5'- uGCGCUCaaccuugcGCGCgCGCCCGGCcgGGCGc -3' miRNA:   3'- gCGCGAGgu------CGCG-GCGGGUCGa-CCGC- -5'
23571	3'	-65.2	NC_005261.1	+	130730	0.7	0.253834
	Target:  5'- uCGCGCUgCCGccgacaugaucgccGCGCUGCUgguaaccacggagCAGCUGGCGc -3' miRNA:   3'- -GCGCGA-GGU--------------CGCGGCGG-------------GUCGACCGC- -5'
23571	3'	-65.2	NC_005261.1	+	130315	0.66	0.444459
	Target:  5'- aGcCGCUgCAGCGCCauggacgGCCCGGCcGcGCu -3' miRNA:   3'- gC-GCGAgGUCGCGG-------CGGGUCGaC-CGc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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