miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 20035 0.66 0.480699
Target:  5'- aGCGggCCGGUuCCGUCCGGC-GGUGu -3'
miRNA:   3'- gCGCgaGGUCGcGGCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 61000 0.66 0.480699
Target:  5'- cCGCGcCUCCGGCuccggcaucGCCGUCguGg-GGCGg -3'
miRNA:   3'- -GCGC-GAGGUCG---------CGGCGGguCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 104162 0.66 0.480699
Target:  5'- cCGCGCcgUCCgcgGGCGCCGCgC-GCgggucgucgGGCGg -3'
miRNA:   3'- -GCGCG--AGG---UCGCGGCGgGuCGa--------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 108171 0.66 0.480699
Target:  5'- aGCGCgUCUggAGCGCagGCCgCGGCcGGCa -3'
miRNA:   3'- gCGCG-AGG--UCGCGg-CGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 2405 0.66 0.480699
Target:  5'- gCGCGCccgCgGGCcCCGCgCGGC-GGCGg -3'
miRNA:   3'- -GCGCGa--GgUCGcGGCGgGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 135558 0.66 0.480699
Target:  5'- nGCGCcgCCGG-GUC-CCCAGCgcGGCGg -3'
miRNA:   3'- gCGCGa-GGUCgCGGcGGGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 125159 0.66 0.480699
Target:  5'- cCGaCGggCCGGCGgacgCGCCCGGCaggGGCGc -3'
miRNA:   3'- -GC-GCgaGGUCGCg---GCGGGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 41037 0.66 0.480699
Target:  5'- uCGuCGUUguccCCGGCGCCgGCCUcagAGCcGGCGg -3'
miRNA:   3'- -GC-GCGA----GGUCGCGG-CGGG---UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 119164 0.66 0.479797
Target:  5'- aCGCGC-CgAGaGCCGCgCAGCccguaccccugccUGGCGg -3'
miRNA:   3'- -GCGCGaGgUCgCGGCGgGUCG-------------ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 73446 0.66 0.477997
Target:  5'- gGCGCUgCGccgcacgucguggcGCGCCG-CgAGCUGGCc -3'
miRNA:   3'- gCGCGAgGU--------------CGCGGCgGgUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 75574 0.66 0.475303
Target:  5'- gGCGCUggCCuccuucucggucaacGGCGUCGCgCCGgacacGCUGGCGc -3'
miRNA:   3'- gCGCGA--GG---------------UCGCGGCG-GGU-----CGACCGC- -5'
23571 3' -65.2 NC_005261.1 + 68783 0.66 0.471723
Target:  5'- aCGCGCcgcagcucgUCC-GCGCUGCCCGucuccgugaugcGCcGGCGc -3'
miRNA:   3'- -GCGCG---------AGGuCGCGGCGGGU------------CGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 136097 0.66 0.471723
Target:  5'- gGCGCgCCGGacgugaGCgCGCUCGGCgcgcagGGCGu -3'
miRNA:   3'- gCGCGaGGUCg-----CG-GCGGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 102320 0.66 0.471723
Target:  5'- gGCGCUggggCC-GCGCUGCCgCGGCgggGGUc -3'
miRNA:   3'- gCGCGA----GGuCGCGGCGG-GUCGa--CCGc -5'
23571 3' -65.2 NC_005261.1 + 33837 0.66 0.471723
Target:  5'- gCGCGCUUUAuggcGCGCCucucgGCCUccGGCcGGCGg -3'
miRNA:   3'- -GCGCGAGGU----CGCGG-----CGGG--UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 14194 0.66 0.471723
Target:  5'- gGCGCU--AGCGCacucagaggCGCCCGGCUacacGGCa -3'
miRNA:   3'- gCGCGAggUCGCG---------GCGGGUCGA----CCGc -5'
23571 3' -65.2 NC_005261.1 + 101458 0.66 0.471723
Target:  5'- gGCGCaacgcacgggCCGGCGUgcagggGCgCCAGCUGGCc -3'
miRNA:   3'- gCGCGa---------GGUCGCGg-----CG-GGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 68985 0.66 0.471723
Target:  5'- gGCGCgggCCAGCGCCucggcgaaccGcCCCAGC-GcGCa -3'
miRNA:   3'- gCGCGa--GGUCGCGG----------C-GGGUCGaC-CGc -5'
23571 3' -65.2 NC_005261.1 + 102458 0.66 0.471723
Target:  5'- cCGCGggcCUCCuGUcucggcccgaGCCGCCUucgcGGCUGGCu -3'
miRNA:   3'- -GCGC---GAGGuCG----------CGGCGGG----UCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 81788 0.66 0.471723
Target:  5'- aCGCGUUgCGguGCGCCGCCgCcuccGCaGGCGg -3'
miRNA:   3'- -GCGCGAgGU--CGCGGCGG-Gu---CGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.