miRNA display CGI


Results 41 - 60 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 88582 0.66 0.471723
Target:  5'- -cCGCUUCGcCGCCgagGCCCGGCccGGCGg -3'
miRNA:   3'- gcGCGAGGUcGCGG---CGGGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 134784 0.66 0.471723
Target:  5'- gGCGCggcggcCCGcGCGcCCGCCUggacGCUGGCc -3'
miRNA:   3'- gCGCGa-----GGU-CGC-GGCGGGu---CGACCGc -5'
23571 3' -65.2 NC_005261.1 + 108655 0.66 0.471723
Target:  5'- aGCcCUgCAcGCGCCGCUgCAGCaGGCGc -3'
miRNA:   3'- gCGcGAgGU-CGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 102320 0.66 0.471723
Target:  5'- gGCGCUggggCC-GCGCUGCCgCGGCgggGGUc -3'
miRNA:   3'- gCGCGA----GGuCGCGGCGG-GUCGa--CCGc -5'
23571 3' -65.2 NC_005261.1 + 66974 0.66 0.471723
Target:  5'- gCGUGCUgcUCGGCGCgggGCUCGGCUGcGCc -3'
miRNA:   3'- -GCGCGA--GGUCGCGg--CGGGUCGAC-CGc -5'
23571 3' -65.2 NC_005261.1 + 44767 0.66 0.471723
Target:  5'- gCGCGCcCCGGCaCCGCgCuggggccgguGCUGGCc -3'
miRNA:   3'- -GCGCGaGGUCGcGGCGgGu---------CGACCGc -5'
23571 3' -65.2 NC_005261.1 + 62577 0.66 0.471723
Target:  5'- gCGCGCgcgCCAggaacGCGCCGgCCGcGC-GGUGg -3'
miRNA:   3'- -GCGCGa--GGU-----CGCGGCgGGU-CGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 37138 0.66 0.471723
Target:  5'- gCGCGCggCC-GCGCUGCaggCGGCcgcgGGCGu -3'
miRNA:   3'- -GCGCGa-GGuCGCGGCGg--GUCGa---CCGC- -5'
23571 3' -65.2 NC_005261.1 + 81788 0.66 0.471723
Target:  5'- aCGCGUUgCGguGCGCCGCCgCcuccGCaGGCGg -3'
miRNA:   3'- -GCGCGAgGU--CGCGGCGG-Gu---CGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 33837 0.66 0.471723
Target:  5'- gCGCGCUUUAuggcGCGCCucucgGCCUccGGCcGGCGg -3'
miRNA:   3'- -GCGCGAGGU----CGCGG-----CGGG--UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 68985 0.66 0.471723
Target:  5'- gGCGCgggCCAGCGCCucggcgaaccGcCCCAGC-GcGCa -3'
miRNA:   3'- gCGCGa--GGUCGCGG----------C-GGGUCGaC-CGc -5'
23571 3' -65.2 NC_005261.1 + 128206 0.66 0.471723
Target:  5'- aGCGCcCCcgacgcgaGGC-CCGCCCGGUcgggUGGCa -3'
miRNA:   3'- gCGCGaGG--------UCGcGGCGGGUCG----ACCGc -5'
23571 3' -65.2 NC_005261.1 + 68783 0.66 0.471723
Target:  5'- aCGCGCcgcagcucgUCC-GCGCUGCCCGucuccgugaugcGCcGGCGc -3'
miRNA:   3'- -GCGCG---------AGGuCGCGGCGGGU------------CGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 101458 0.66 0.471723
Target:  5'- gGCGCaacgcacgggCCGGCGUgcagggGCgCCAGCUGGCc -3'
miRNA:   3'- gCGCGa---------GGUCGCGg-----CG-GGUCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 94859 0.66 0.471723
Target:  5'- cCGCGaggCCGaUGCCGCCgCAGC-GGCa -3'
miRNA:   3'- -GCGCga-GGUcGCGGCGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 102458 0.66 0.471723
Target:  5'- cCGCGggcCUCCuGUcucggcccgaGCCGCCUucgcGGCUGGCu -3'
miRNA:   3'- -GCGC---GAGGuCG----------CGGCGGG----UCGACCGc -5'
23571 3' -65.2 NC_005261.1 + 122447 0.66 0.471723
Target:  5'- cCGCGCgggCGGCGCC-CgCCAGC-GGCc -3'
miRNA:   3'- -GCGCGag-GUCGCGGcG-GGUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 136097 0.66 0.471723
Target:  5'- gGCGCgCCGGacgugaGCgCGCUCGGCgcgcagGGCGu -3'
miRNA:   3'- gCGCGaGGUCg-----CG-GCGGGUCGa-----CCGC- -5'
23571 3' -65.2 NC_005261.1 + 14194 0.66 0.471723
Target:  5'- gGCGCU--AGCGCacucagaggCGCCCGGCUacacGGCa -3'
miRNA:   3'- gCGCGAggUCGCG---------GCGGGUCGA----CCGc -5'
23571 3' -65.2 NC_005261.1 + 46964 0.66 0.471723
Target:  5'- cCGCGCcgucgCCGcuGcCGCCGCCC-GCcGGCa -3'
miRNA:   3'- -GCGCGa----GGU--C-GCGGCGGGuCGaCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.