Results 41 - 60 of 952 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23571 | 3' | -65.2 | NC_005261.1 | + | 46492 | 0.66 | 0.471723 |
Target: 5'- gGCGCccUCCgcggGGCGCaGCCCGGCgucGCGc -3' miRNA: 3'- gCGCG--AGG----UCGCGgCGGGUCGac-CGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 42275 | 0.66 | 0.471723 |
Target: 5'- gGCGCgCUGGgGUCGauCCCGGCgGGCGc -3' miRNA: 3'- gCGCGaGGUCgCGGC--GGGUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 30267 | 0.66 | 0.471723 |
Target: 5'- gGCGCggcggcCCGcGCGcCCGCCUggacGCUGGCc -3' miRNA: 3'- gCGCGa-----GGU-CGC-GGCGGGu---CGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 11138 | 0.66 | 0.471723 |
Target: 5'- cCGCGC-CCAGCcgucauugcgGCgGCgCGGC-GGCGg -3' miRNA: 3'- -GCGCGaGGUCG----------CGgCGgGUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 44767 | 0.66 | 0.471723 |
Target: 5'- gCGCGCcCCGGCaCCGCgCuggggccgguGCUGGCc -3' miRNA: 3'- -GCGCGaGGUCGcGGCGgGu---------CGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 62577 | 0.66 | 0.471723 |
Target: 5'- gCGCGCgcgCCAggaacGCGCCGgCCGcGC-GGUGg -3' miRNA: 3'- -GCGCGa--GGU-----CGCGGCgGGU-CGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 70063 | 0.66 | 0.471723 |
Target: 5'- cCGCGa-CCAGCGCCccggccaccgaaGCCCAGaCguacgccGGCGa -3' miRNA: 3'- -GCGCgaGGUCGCGG------------CGGGUC-Ga------CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 136097 | 0.66 | 0.471723 |
Target: 5'- gGCGCgCCGGacgugaGCgCGCUCGGCgcgcagGGCGu -3' miRNA: 3'- gCGCGaGGUCg-----CG-GCGGGUCGa-----CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 102458 | 0.66 | 0.471723 |
Target: 5'- cCGCGggcCUCCuGUcucggcccgaGCCGCCUucgcGGCUGGCu -3' miRNA: 3'- -GCGC---GAGGuCG----------CGGCGGG----UCGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 33837 | 0.66 | 0.471723 |
Target: 5'- gCGCGCUUUAuggcGCGCCucucgGCCUccGGCcGGCGg -3' miRNA: 3'- -GCGCGAGGU----CGCGG-----CGGG--UCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 122447 | 0.66 | 0.471723 |
Target: 5'- cCGCGCgggCGGCGCC-CgCCAGC-GGCc -3' miRNA: 3'- -GCGCGag-GUCGCGGcG-GGUCGaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 94859 | 0.66 | 0.471723 |
Target: 5'- cCGCGaggCCGaUGCCGCCgCAGC-GGCa -3' miRNA: 3'- -GCGCga-GGUcGCGGCGG-GUCGaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 134784 | 0.66 | 0.471723 |
Target: 5'- gGCGCggcggcCCGcGCGcCCGCCUggacGCUGGCc -3' miRNA: 3'- gCGCGa-----GGU-CGC-GGCGGGu---CGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 101458 | 0.66 | 0.471723 |
Target: 5'- gGCGCaacgcacgggCCGGCGUgcagggGCgCCAGCUGGCc -3' miRNA: 3'- gCGCGa---------GGUCGCGg-----CG-GGUCGACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 68783 | 0.66 | 0.471723 |
Target: 5'- aCGCGCcgcagcucgUCC-GCGCUGCCCGucuccgugaugcGCcGGCGc -3' miRNA: 3'- -GCGCG---------AGGuCGCGGCGGGU------------CGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 128206 | 0.66 | 0.471723 |
Target: 5'- aGCGCcCCcgacgcgaGGC-CCGCCCGGUcgggUGGCa -3' miRNA: 3'- gCGCGaGG--------UCGcGGCGGGUCG----ACCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 46964 | 0.66 | 0.471723 |
Target: 5'- cCGCGCcgucgCCGcuGcCGCCGCCC-GCcGGCa -3' miRNA: 3'- -GCGCGa----GGU--C-GCGGCGGGuCGaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 68985 | 0.66 | 0.471723 |
Target: 5'- gGCGCgggCCAGCGCCucggcgaaccGcCCCAGC-GcGCa -3' miRNA: 3'- gCGCGa--GGUCGCGG----------C-GGGUCGaC-CGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 14194 | 0.66 | 0.471723 |
Target: 5'- gGCGCU--AGCGCacucagaggCGCCCGGCUacacGGCa -3' miRNA: 3'- gCGCGAggUCGCG---------GCGGGUCGA----CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 37138 | 0.66 | 0.471723 |
Target: 5'- gCGCGCggCC-GCGCUGCaggCGGCcgcgGGCGu -3' miRNA: 3'- -GCGCGa-GGuCGCGGCGg--GUCGa---CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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