Results 1 - 20 of 952 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23571 | 3' | -65.2 | NC_005261.1 | + | 77823 | 0.66 | 0.484312 |
Target: 5'- uGcCGCcCCAGCaccaccgccccccucGCCGCCaCAGCcGGCu -3' miRNA: 3'- gC-GCGaGGUCG---------------CGGCGG-GUCGaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 70063 | 0.66 | 0.471723 |
Target: 5'- cCGCGa-CCAGCGCCccggccaccgaaGCCCAGaCguacgccGGCGa -3' miRNA: 3'- -GCGCgaGGUCGCGG------------CGGGUC-Ga------CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 88582 | 0.66 | 0.471723 |
Target: 5'- -cCGCUUCGcCGCCgagGCCCGGCccGGCGg -3' miRNA: 3'- gcGCGAGGUcGCGG---CGGGUCGa-CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 121974 | 1.08 | 0.000403 |
Target: 5'- cCGCGCUCCAGCGCCGCCCAGCUGGCGg -3' miRNA: 3'- -GCGCGAGGUCGCGGCGGGUCGACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 41037 | 0.66 | 0.480699 |
Target: 5'- uCGuCGUUguccCCGGCGCCgGCCUcagAGCcGGCGg -3' miRNA: 3'- -GC-GCGA----GGUCGCGG-CGGG---UCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 107989 | 0.66 | 0.480699 |
Target: 5'- uCGUcuGCUCCAGCccGCCGucgggcagcCCCAGCagcGGCa -3' miRNA: 3'- -GCG--CGAGGUCG--CGGC---------GGGUCGa--CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 104162 | 0.66 | 0.480699 |
Target: 5'- cCGCGCcgUCCgcgGGCGCCGCgC-GCgggucgucgGGCGg -3' miRNA: 3'- -GCGCG--AGG---UCGCGGCGgGuCGa--------CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 61000 | 0.66 | 0.480699 |
Target: 5'- cCGCGcCUCCGGCuccggcaucGCCGUCguGg-GGCGg -3' miRNA: 3'- -GCGC-GAGGUCG---------CGGCGGguCgaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 20035 | 0.66 | 0.480699 |
Target: 5'- aGCGggCCGGUuCCGUCCGGC-GGUGu -3' miRNA: 3'- gCGCgaGGUCGcGGCGGGUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 2405 | 0.66 | 0.480699 |
Target: 5'- gCGCGCccgCgGGCcCCGCgCGGC-GGCGg -3' miRNA: 3'- -GCGCGa--GgUCGcGGCGgGUCGaCCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 113302 | 0.66 | 0.480699 |
Target: 5'- -uCGCUgCCGcGgGCCuggGCCCGGCUGcGCGa -3' miRNA: 3'- gcGCGA-GGU-CgCGG---CGGGUCGAC-CGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 30100 | 0.66 | 0.480699 |
Target: 5'- gCGUGCUCCGG-GCaGCUgAGCugcuUGGCGc -3' miRNA: 3'- -GCGCGAGGUCgCGgCGGgUCG----ACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 116697 | 0.66 | 0.481601 |
Target: 5'- aGCGCcucgcucaucggccgCCAGCuggccgacgucGCCGCCCuGCUGaGCc -3' miRNA: 3'- gCGCGa--------------GGUCG-----------CGGCGGGuCGAC-CGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 93210 | 0.66 | 0.480699 |
Target: 5'- uCGgGCUCCAGCa--GCgCCAGCgcGGCa -3' miRNA: 3'- -GCgCGAGGUCGcggCG-GGUCGa-CCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 83004 | 0.66 | 0.481601 |
Target: 5'- uCGCGCaccgagccgccgucgCCGGCGCC-CCCGGgaGGg- -3' miRNA: 3'- -GCGCGa--------------GGUCGCGGcGGGUCgaCCgc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 31040 | 0.66 | 0.480699 |
Target: 5'- nGCGCcgCCGG-GUC-CCCAGCgcGGCGg -3' miRNA: 3'- gCGCGa-GGUCgCGGcGGGUCGa-CCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 3654 | 0.66 | 0.480699 |
Target: 5'- aGCGCgUCUggAGCGCagGCCgCGGCcGGCa -3' miRNA: 3'- gCGCG-AGG--UCGCGg-CGG-GUCGaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 46964 | 0.66 | 0.471723 |
Target: 5'- cCGCGCcgucgCCGcuGcCGCCGCCC-GCcGGCa -3' miRNA: 3'- -GCGCGa----GGU--C-GCGGCGGGuCGaCCGc -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 48850 | 0.66 | 0.480699 |
Target: 5'- cCGCGCagCAG-GCCcagcGCCCGGgccaUGGCGg -3' miRNA: 3'- -GCGCGagGUCgCGG----CGGGUCg---ACCGC- -5' |
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23571 | 3' | -65.2 | NC_005261.1 | + | 106568 | 0.66 | 0.480699 |
Target: 5'- gCGCGCgccggccCCGGgGCCGCCgC-GC-GGCGc -3' miRNA: 3'- -GCGCGa------GGUCgCGGCGG-GuCGaCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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