miRNA display CGI


Results 41 - 60 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 103380 0.66 0.469048
Target:  5'- cCGCGCgCCGccGCGCCGCggccgccugcgccuCCAGCUccGcGCGg -3'
miRNA:   3'- -GCGCGaGGU--CGCGGCG--------------GGUCGA--C-CGC- -5'
23571 3' -65.2 NC_005261.1 + 70063 0.66 0.471723
Target:  5'- cCGCGa-CCAGCGCCccggccaccgaaGCCCAGaCguacgccGGCGa -3'
miRNA:   3'- -GCGCgaGGUCGCGG------------CGGGUC-Ga------CCGC- -5'
23571 3' -65.2 NC_005261.1 + 83004 0.66 0.481601
Target:  5'- uCGCGCaccgagccgccgucgCCGGCGCC-CCCGGgaGGg- -3'
miRNA:   3'- -GCGCGa--------------GGUCGCGGcGGGUCgaCCgc -5'
23571 3' -65.2 NC_005261.1 + 132378 0.66 0.469048
Target:  5'- cCGCGCUCgCGGCGCUGuucCCCGaggccgccgccgacGcCUGGCc -3'
miRNA:   3'- -GCGCGAG-GUCGCGGC---GGGU--------------C-GACCGc -5'
23571 3' -65.2 NC_005261.1 + 116697 0.66 0.481601
Target:  5'- aGCGCcucgcucaucggccgCCAGCuggccgacgucGCCGCCCuGCUGaGCc -3'
miRNA:   3'- gCGCGa--------------GGUCG-----------CGGCGGGuCGAC-CGc -5'
23571 3' -65.2 NC_005261.1 + 4377 0.66 0.454033
Target:  5'- cCGCGCcgCCgaAGCGCacgcgGCCgGGCggcGGCGg -3'
miRNA:   3'- -GCGCGa-GG--UCGCGg----CGGgUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 41037 0.66 0.480699
Target:  5'- uCGuCGUUguccCCGGCGCCgGCCUcagAGCcGGCGg -3'
miRNA:   3'- -GC-GCGA----GGUCGCGG-CGGG---UCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 94612 0.66 0.459303
Target:  5'- gCGCGCgcccucgccgccgCCGGCGCCGUcgUCGGCgcgcGCGa -3'
miRNA:   3'- -GCGCGa------------GGUCGCGGCG--GGUCGac--CGC- -5'
23571 3' -65.2 NC_005261.1 + 47453 0.66 0.46195
Target:  5'- gGCGC-CCGGC-CCGCUUgcgcgggGGCUgGGCGa -3'
miRNA:   3'- gCGCGaGGUCGcGGCGGG-------UCGA-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 95650 0.66 0.462834
Target:  5'- aGCGCgacgCgCGGCGCCGCgaCgGGCgcgGGUGu -3'
miRNA:   3'- gCGCGa---G-GUCGCGGCG--GgUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 1178 0.66 0.462834
Target:  5'- cCGCGCcgcggCCGGgGCCgggGCCgGGCgcGGCGc -3'
miRNA:   3'- -GCGCGa----GGUCgCGG---CGGgUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 98555 0.66 0.462834
Target:  5'- cCGCGaaaUCCGGCgggcgGCCGUCCuccgcgGGCUcgGGCGa -3'
miRNA:   3'- -GCGCg--AGGUCG-----CGGCGGG------UCGA--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 14240 0.66 0.466379
Target:  5'- cCGCGCcggCCGGgGCCuuuGCCCcggugucggcuucggGGCUGGgGc -3'
miRNA:   3'- -GCGCGa--GGUCgCGG---CGGG---------------UCGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 23689 0.66 0.471723
Target:  5'- aGCGCcCCcgacgcgaGGC-CCGCCCGGUcgggUGGCa -3'
miRNA:   3'- gCGCGaGG--------UCGcGGCGGGUCG----ACCGc -5'
23571 3' -65.2 NC_005261.1 + 98677 0.66 0.471723
Target:  5'- gCGgGCUCCgccggggccggaGGCGCgGCCgGaGCUGGgGc -3'
miRNA:   3'- -GCgCGAGG------------UCGCGgCGGgU-CGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 46492 0.66 0.471723
Target:  5'- gGCGCccUCCgcggGGCGCaGCCCGGCgucGCGc -3'
miRNA:   3'- gCGCG--AGG----UCGCGgCGGGUCGac-CGC- -5'
23571 3' -65.2 NC_005261.1 + 88582 0.66 0.471723
Target:  5'- -cCGCUUCGcCGCCgagGCCCGGCccGGCGg -3'
miRNA:   3'- gcGCGAGGUcGCGG---CGGGUCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 93210 0.66 0.480699
Target:  5'- uCGgGCUCCAGCa--GCgCCAGCgcGGCa -3'
miRNA:   3'- -GCgCGAGGUCGcggCG-GGUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 20035 0.66 0.480699
Target:  5'- aGCGggCCGGUuCCGUCCGGC-GGUGu -3'
miRNA:   3'- gCGCgaGGUCGcGGCGGGUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 104162 0.66 0.480699
Target:  5'- cCGCGCcgUCCgcgGGCGCCGCgC-GCgggucgucgGGCGg -3'
miRNA:   3'- -GCGCG--AGG---UCGCGGCGgGuCGa--------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.