miRNA display CGI


Results 61 - 80 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 3' -65.2 NC_005261.1 + 14240 0.66 0.466379
Target:  5'- cCGCGCcggCCGGgGCCuuuGCCCcggugucggcuucggGGCUGGgGc -3'
miRNA:   3'- -GCGCGa--GGUCgCGG---CGGG---------------UCGACCgC- -5'
23571 3' -65.2 NC_005261.1 + 64063 0.66 0.462834
Target:  5'- uGCGCcaCCGGCuGCCGCaCGG-UGGCGu -3'
miRNA:   3'- gCGCGa-GGUCG-CGGCGgGUCgACCGC- -5'
23571 3' -65.2 NC_005261.1 + 107989 0.66 0.480699
Target:  5'- uCGUcuGCUCCAGCccGCCGucgggcagcCCCAGCagcGGCa -3'
miRNA:   3'- -GCG--CGAGGUCG--CGGC---------GGGUCGa--CCGc -5'
23571 3' -65.2 NC_005261.1 + 61000 0.66 0.480699
Target:  5'- cCGCGcCUCCGGCuccggcaucGCCGUCguGg-GGCGg -3'
miRNA:   3'- -GCGC-GAGGUCG---------CGGCGGguCgaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 6238 0.66 0.480699
Target:  5'- uGCGC-CCGGgGagggccugcCCGCCCcGCggGGCGg -3'
miRNA:   3'- gCGCGaGGUCgC---------GGCGGGuCGa-CCGC- -5'
23571 3' -65.2 NC_005261.1 + 3654 0.66 0.480699
Target:  5'- aGCGCgUCUggAGCGCagGCCgCGGCcGGCa -3'
miRNA:   3'- gCGCG-AGG--UCGCGg-CGG-GUCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 82939 0.66 0.471723
Target:  5'- cCGCGUaaagCCAGCGCggCGCCgGGCggaagacgUGGUGc -3'
miRNA:   3'- -GCGCGa---GGUCGCG--GCGGgUCG--------ACCGC- -5'
23571 3' -65.2 NC_005261.1 + 30267 0.66 0.471723
Target:  5'- gGCGCggcggcCCGcGCGcCCGCCUggacGCUGGCc -3'
miRNA:   3'- gCGCGa-----GGU-CGC-GGCGGGu---CGACCGc -5'
23571 3' -65.2 NC_005261.1 + 76606 0.66 0.471723
Target:  5'- gCGCGCUgCCGccCGCCGCCCcGCUG-Cc -3'
miRNA:   3'- -GCGCGA-GGUc-GCGGCGGGuCGACcGc -5'
23571 3' -65.2 NC_005261.1 + 4137 0.66 0.471723
Target:  5'- aGCcCUgCAcGCGCCGCUgCAGCaGGCGc -3'
miRNA:   3'- gCGcGAgGU-CGCGGCGG-GUCGaCCGC- -5'
23571 3' -65.2 NC_005261.1 + 81504 0.66 0.445324
Target:  5'- aGCGCggCgCGcGCGCCGCcgCCGGCgccaGGCGc -3'
miRNA:   3'- gCGCGa-G-GU-CGCGGCG--GGUCGa---CCGC- -5'
23571 3' -65.2 NC_005261.1 + 49528 0.66 0.445324
Target:  5'- uCGCGggCCAGcCGCCGUCC-GC-GGCc -3'
miRNA:   3'- -GCGCgaGGUC-GCGGCGGGuCGaCCGc -5'
23571 3' -65.2 NC_005261.1 + 107107 0.66 0.462834
Target:  5'- aGCGCccCCAGCcgcgccaCCGCgCCGGCgacGGCGc -3'
miRNA:   3'- gCGCGa-GGUCGc------GGCG-GGUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 20147 0.66 0.462834
Target:  5'- aGCGCU-CAG-GCCGCgCCGGCUcucugcucGGCu -3'
miRNA:   3'- gCGCGAgGUCgCGGCG-GGUCGA--------CCGc -5'
23571 3' -65.2 NC_005261.1 + 94612 0.66 0.459303
Target:  5'- gCGCGCgcccucgccgccgCCGGCGCCGUcgUCGGCgcgcGCGa -3'
miRNA:   3'- -GCGCGa------------GGUCGCGGCG--GGUCGac--CGC- -5'
23571 3' -65.2 NC_005261.1 + 4377 0.66 0.454033
Target:  5'- cCGCGCcgCCgaAGCGCacgcgGCCgGGCggcGGCGg -3'
miRNA:   3'- -GCGCGa-GG--UCGCGg----CGGgUCGa--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 33458 0.66 0.454033
Target:  5'- cCGcCGC-CgCAGcCGCCGCCgCAGCcgGGCc -3'
miRNA:   3'- -GC-GCGaG-GUC-GCGGCGG-GUCGa-CCGc -5'
23571 3' -65.2 NC_005261.1 + 4882 0.66 0.454033
Target:  5'- gGcCGCcUCAGCcgcgGCCGCCuCGGCUucGGCGg -3'
miRNA:   3'- gC-GCGaGGUCG----CGGCGG-GUCGA--CCGC- -5'
23571 3' -65.2 NC_005261.1 + 10257 0.66 0.445324
Target:  5'- cCGCGggCCuGGCGCCuucuGCCCugaGGaCUGGCGc -3'
miRNA:   3'- -GCGCgaGG-UCGCGG----CGGG---UC-GACCGC- -5'
23571 3' -65.2 NC_005261.1 + 129762 0.66 0.445324
Target:  5'- --aGCaCCGGCGaCCGCCgGGCUcGGCc -3'
miRNA:   3'- gcgCGaGGUCGC-GGCGGgUCGA-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.