miRNA display CGI


Results 101 - 120 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 86874 0.66 0.923151
Target:  5'- gGGCG-CGGCGGCCUUGgccgcgcccuGGUccGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGGUauu-------UCA--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 125181 0.67 0.92089
Target:  5'- cGGCAggggcgCGcGCGGCCCCgcgcccuggcucgugGUGcuGGGggGCGCg -3'
miRNA:   3'- -CCGUa-----GU-CGCCGGGG---------------UAU--UUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 29918 0.67 0.91859
Target:  5'- aGCAcgCGGCGGCcgucugggaCCCGUGcAGgcgaGCGCa -3'
miRNA:   3'- cCGUa-GUCGCCG---------GGGUAUuUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 136454 0.67 0.91859
Target:  5'- cGGCucugCcGCGGCgCCAac--GUGCGCu -3'
miRNA:   3'- -CCGua--GuCGCCGgGGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 85404 0.67 0.91859
Target:  5'- cGGCga-GGCGGCCCUcgAA---GCGCc -3'
miRNA:   3'- -CCGuagUCGCCGGGGuaUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 78751 0.67 0.91859
Target:  5'- uGGCG-CGGCGGCCgCGccg---GCGCu -3'
miRNA:   3'- -CCGUaGUCGCCGGgGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 36809 0.67 0.91859
Target:  5'- cGCcUCGGCGGCCgacgUCGUGAcgcaAGcgGCGCu -3'
miRNA:   3'- cCGuAGUCGCCGG----GGUAUU----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 20017 0.67 0.91859
Target:  5'- cGGcCGUCAGC-GCCCCGcgca--GCGCg -3'
miRNA:   3'- -CC-GUAGUCGcCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 3972 0.67 0.91859
Target:  5'- aGGUacAUCGgguacGCGGCCCgCAgggcgcGUGCGCc -3'
miRNA:   3'- -CCG--UAGU-----CGCCGGG-GUauuu--CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 99545 0.67 0.91859
Target:  5'- cGCGUCcaGGCGGCgCgCCAgGAAG-GCGUc -3'
miRNA:   3'- cCGUAG--UCGCCG-G-GGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 35524 0.67 0.91859
Target:  5'- cGGCAUCGGCGGCaacaaCAgcagcaacGGUG-GCg -3'
miRNA:   3'- -CCGUAGUCGCCGgg---GUauu-----UCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 83680 0.67 0.91859
Target:  5'- gGGCGcgCAGCGcGCCgCCG--AGGcgGCGCc -3'
miRNA:   3'- -CCGUa-GUCGC-CGG-GGUauUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 65707 0.67 0.91859
Target:  5'- cGCG-CAGCGaGCCgCCAaGGAGgaugcgGCGCc -3'
miRNA:   3'- cCGUaGUCGC-CGG-GGUaUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 117439 0.67 0.91859
Target:  5'- gGGguUcCGGCGGCUgCugcagAAGGUGCGg -3'
miRNA:   3'- -CCguA-GUCGCCGGgGua---UUUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 122588 0.67 0.91859
Target:  5'- cGCcgCAGCGGCCUUGUAcgccGCGUu -3'
miRNA:   3'- cCGuaGUCGCCGGGGUAUuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 98669 0.67 0.91859
Target:  5'- aGGCGagGGCgGGCUCCGccGGGgccggagGCGCg -3'
miRNA:   3'- -CCGUagUCG-CCGGGGUauUUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 65142 0.67 0.91859
Target:  5'- uGCAUCaccAGCcGCgCCAgcgcgcagAAGGUGCGCu -3'
miRNA:   3'- cCGUAG---UCGcCGgGGUa-------UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 93114 0.67 0.917425
Target:  5'- aGCAUCAGCgcgcccgugcccGGCUCCAcgcgcagGCGCg -3'
miRNA:   3'- cCGUAGUCG------------CCGGGGUauuuca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 65399 0.67 0.91625
Target:  5'- cGGguUgGGCGGCCCCGgcagcuccacGUcCGCg -3'
miRNA:   3'- -CCguAgUCGCCGGGGUauuu------CAcGCG- -5'
23571 5' -54.3 NC_005261.1 + 15979 0.67 0.912666
Target:  5'- cGGCggCGGCgcuGGCCCUGcUGA--UGCGCg -3'
miRNA:   3'- -CCGuaGUCG---CCGGGGU-AUUucACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.