miRNA display CGI


Results 81 - 100 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 50294 0.66 0.929692
Target:  5'- uGGCggCGcGCGGCUCCAggccccGGGUG-GCg -3'
miRNA:   3'- -CCGuaGU-CGCCGGGGUau----UUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 107331 0.66 0.929692
Target:  5'- gGGCcg-GGCGGCCCCAgcccGAGcucggGCGg -3'
miRNA:   3'- -CCGuagUCGCCGGGGUau--UUCa----CGCg -5'
23571 5' -54.3 NC_005261.1 + 66213 0.66 0.929161
Target:  5'- gGGCGcgCAGCGucGCCCCcggcguUAAGGccaggggcgacgcUGCGCa -3'
miRNA:   3'- -CCGUa-GUCGC--CGGGGu-----AUUUC-------------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 35803 0.66 0.928091
Target:  5'- uGGCG-CGGgacggccuggacccCGGCCCCG-AGAGcucgGCGCa -3'
miRNA:   3'- -CCGUaGUC--------------GCCGGGGUaUUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 100045 0.66 0.926466
Target:  5'- gGGCGUCAGCucgagcgcgccgccGCCgCCcgGGGGcGCGCc -3'
miRNA:   3'- -CCGUAGUCGc-------------CGG-GGuaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 93451 0.66 0.924266
Target:  5'- uGGCcagCAcCGGCCCCAgcgcGGUGCcgggGCg -3'
miRNA:   3'- -CCGua-GUcGCCGGGGUauu-UCACG----CG- -5'
23571 5' -54.3 NC_005261.1 + 137036 0.66 0.924266
Target:  5'- cGGCGUCGGUGGagggcggaCCGUcggcaggcgcGGAG-GCGCg -3'
miRNA:   3'- -CCGUAGUCGCCgg------GGUA----------UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 90574 0.66 0.924266
Target:  5'- cGGCGcugCGGCuGGCCgUcgAGgaggacgcGGUGCGCg -3'
miRNA:   3'- -CCGUa--GUCG-CCGGgGuaUU--------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 115107 0.66 0.924266
Target:  5'- cGGCcUCGGCGGCgcugCCCAcg----GCGCc -3'
miRNA:   3'- -CCGuAGUCGCCG----GGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 88601 0.66 0.924266
Target:  5'- cGGCc-CGGCGGCgCCAcgGucGUGaCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUa-UuuCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 47714 0.66 0.924266
Target:  5'- cGGCGUCGGgGGCCUCcucg---GCGg -3'
miRNA:   3'- -CCGUAGUCgCCGGGGuauuucaCGCg -5'
23571 5' -54.3 NC_005261.1 + 53312 0.66 0.924266
Target:  5'- gGGUcgAUCAGgaGGCCgCAggu-GUGCGCc -3'
miRNA:   3'- -CCG--UAGUCg-CCGGgGUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 56118 0.66 0.924266
Target:  5'- cGGCGggAGCGcGCCgCAgggcgGGGG-GCGCg -3'
miRNA:   3'- -CCGUagUCGC-CGGgGUa----UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 124718 0.66 0.924266
Target:  5'- uGGUAUUuuuuGCGGCCggCCGgcGAcUGCGCg -3'
miRNA:   3'- -CCGUAGu---CGCCGG--GGUauUUcACGCG- -5'
23571 5' -54.3 NC_005261.1 + 38167 0.66 0.924266
Target:  5'- cGGCcgCAGCacGGCUgCcUGGAGgccuggGCGCg -3'
miRNA:   3'- -CCGuaGUCG--CCGGgGuAUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 43378 0.66 0.924266
Target:  5'- cGGCAUCGGCcucgcggugccGGCaCCGUccAG-GCGCc -3'
miRNA:   3'- -CCGUAGUCG-----------CCGgGGUAuuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 45983 0.66 0.924266
Target:  5'- aGCucuugCAGCacgGGCgCCAUGu-GUGCGCg -3'
miRNA:   3'- cCGua---GUCG---CCGgGGUAUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 19235 0.66 0.924266
Target:  5'- gGGCc-CAGCaGGCCCCGacgcaGAAGcacaGCGCg -3'
miRNA:   3'- -CCGuaGUCG-CCGGGGUa----UUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 5429 0.66 0.924266
Target:  5'- aGGUAgCGGCucauGGCCUCGgcgAAGGgGCGCu -3'
miRNA:   3'- -CCGUaGUCG----CCGGGGUa--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 44163 0.66 0.923709
Target:  5'- cGGCggCGGCGGUucugcuCCCGgcgccgcUGGGGggGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG------GGGU-------AUUUCa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.