miRNA display CGI


Results 61 - 80 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 33514 0.66 0.929692
Target:  5'- gGGCggCGGCGGCaccgcuggCCCcgGGAGcaccagggGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG--------GGGuaUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 104334 0.66 0.929692
Target:  5'- cGCGUcCAGCGGCCggCCGUc----GCGCa -3'
miRNA:   3'- cCGUA-GUCGCCGG--GGUAuuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 63689 0.66 0.929692
Target:  5'- cGCGUCAuauacagguucuGCGGCguguugcccaggUCCGUGAGcggcGUGCGCa -3'
miRNA:   3'- cCGUAGU------------CGCCG------------GGGUAUUU----CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 94260 0.66 0.929692
Target:  5'- cGGCGcagGGCGGCgCCGcGAGGcucuugGCGCa -3'
miRNA:   3'- -CCGUag-UCGCCGgGGUaUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 109823 0.66 0.929692
Target:  5'- cGCcgCGGCGGCCgCCGaaucugGCGUg -3'
miRNA:   3'- cCGuaGUCGCCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 61995 0.66 0.929692
Target:  5'- aGGCcgcCAGC-GCCCCGUAcAGgcaaaaGCGCc -3'
miRNA:   3'- -CCGua-GUCGcCGGGGUAUuUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 126063 0.66 0.929692
Target:  5'- cGGCGcCAGCcgcccgccGGCCUCGgcGGGcGCGCc -3'
miRNA:   3'- -CCGUaGUCG--------CCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 19565 0.66 0.929692
Target:  5'- aGCGcCAGCGGgcgguugauuCUCCA-GAGGUGCGUg -3'
miRNA:   3'- cCGUaGUCGCC----------GGGGUaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 50294 0.66 0.929692
Target:  5'- uGGCggCGcGCGGCUCCAggccccGGGUG-GCg -3'
miRNA:   3'- -CCGuaGU-CGCCGGGGUau----UUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 2814 0.66 0.929692
Target:  5'- gGGCcg-GGCGGCCCCAgcccGAGcucggGCGg -3'
miRNA:   3'- -CCGuagUCGCCGGGGUau--UUCa----CGCg -5'
23571 5' -54.3 NC_005261.1 + 11830 0.66 0.929692
Target:  5'- uGGgGgCGGgGGCCCCGc-GGGcGCGCg -3'
miRNA:   3'- -CCgUaGUCgCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 106545 0.66 0.929692
Target:  5'- cGGC---GGCGGCCgCGUccGGgccgGCGCg -3'
miRNA:   3'- -CCGuagUCGCCGGgGUAuuUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 37866 0.66 0.929692
Target:  5'- cGGCcUCGGUcGCCgCCGUGAAcGUGCu- -3'
miRNA:   3'- -CCGuAGUCGcCGG-GGUAUUU-CACGcg -5'
23571 5' -54.3 NC_005261.1 + 107331 0.66 0.929692
Target:  5'- gGGCcg-GGCGGCCCCAgcccGAGcucggGCGg -3'
miRNA:   3'- -CCGuagUCGCCGGGGUau--UUCa----CGCg -5'
23571 5' -54.3 NC_005261.1 + 116347 0.66 0.929692
Target:  5'- uGGgGgCGGgGGCCCCGc-GGGcGCGCg -3'
miRNA:   3'- -CCgUaGUCgCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 138031 0.66 0.929692
Target:  5'- gGGCggCGGCGGCaccgcuggCCCcgGGAGcaccagggGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG--------GGGuaUUUCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 95319 0.66 0.929692
Target:  5'- cGCc-CGGCGGCCCCGga----GCGCc -3'
miRNA:   3'- cCGuaGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 24116 0.66 0.929692
Target:  5'- aGGuCAUCGGCGGCCg---AGAGgaaCGCg -3'
miRNA:   3'- -CC-GUAGUCGCCGGgguaUUUCac-GCG- -5'
23571 5' -54.3 NC_005261.1 + 108863 0.66 0.929692
Target:  5'- gGGCAguccCAGaGGCCCUcgcGAGUGuCGCc -3'
miRNA:   3'- -CCGUa---GUCgCCGGGGuauUUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 348 0.66 0.929692
Target:  5'- gGGCggCGGCGGCaccgcuggCCCcgGGAGcaccagggGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG--------GGGuaUUUCa-------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.