miRNA display CGI


Results 61 - 80 of 441 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 85543 0.73 0.601591
Target:  5'- cGGCAgCGGCgcgcccgcgagcagGGCCCgCucGAAGUGCGCg -3'
miRNA:   3'- -CCGUaGUCG--------------CCGGG-GuaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 64338 0.73 0.604717
Target:  5'- cGCGUCAG-GGCCcgccuccaccaCCAcuacUGAGGUGCGCu -3'
miRNA:   3'- cCGUAGUCgCCGG-----------GGU----AUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 79160 0.73 0.604717
Target:  5'- aGCAcCAGCaGCCCCGUGGccAGcGCGCc -3'
miRNA:   3'- cCGUaGUCGcCGGGGUAUU--UCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 134863 0.73 0.615147
Target:  5'- cGGCcgCGcucGCGGCCCU--GAAGgccgGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCGGGGuaUUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 30346 0.73 0.615147
Target:  5'- cGGCcgCGcucGCGGCCCU--GAAGgccgGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCGGGGuaUUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 33057 0.73 0.615147
Target:  5'- cGGCggCGGCgGGCCCCGUGgacgccgcccucGAGccgcgaggaccUGCGCg -3'
miRNA:   3'- -CCGuaGUCG-CCGGGGUAU------------UUC-----------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 7589 0.73 0.625591
Target:  5'- cGCGUCGGCGagcgcacgcgcGCCCCGcgcgcuguUGAAG-GCGCa -3'
miRNA:   3'- cCGUAGUCGC-----------CGGGGU--------AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 59661 0.73 0.625591
Target:  5'- gGGCGaacUCGGCGGUCCCGgc----GCGCg -3'
miRNA:   3'- -CCGU---AGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 35239 0.73 0.625591
Target:  5'- cGCGU-GGCGGCCgCCGUGucGcGCGCg -3'
miRNA:   3'- cCGUAgUCGCCGG-GGUAUuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 116423 0.73 0.625591
Target:  5'- aGGCGUCGG-GGCCCCcgAc-GUGuCGCc -3'
miRNA:   3'- -CCGUAGUCgCCGGGGuaUuuCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 98329 0.73 0.62977
Target:  5'- aGCggCGGCGcGCCCCGUGucgacgcgggggcggGGGUGgGCg -3'
miRNA:   3'- cCGuaGUCGC-CGGGGUAU---------------UUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 52990 0.72 0.63395
Target:  5'- aGGCGggGGCGGCgCCCAggcgucgGCGCa -3'
miRNA:   3'- -CCGUagUCGCCG-GGGUauuuca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 74892 0.72 0.63604
Target:  5'- cGGCGgagUCGGCGGCCCgCGcu-GGccGCGCg -3'
miRNA:   3'- -CCGU---AGUCGCCGGG-GUauuUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 121978 0.72 0.63604
Target:  5'- cGGCccCGGCGGCCCCg------GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 75855 0.72 0.63604
Target:  5'- cGGCGccgaCGGCGGCCCCGacggcgccguGGGcGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGGGUau--------UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 49261 0.72 0.646485
Target:  5'- cGGCGUCGGCGcGCacguCCGcGAGGaagGCGCa -3'
miRNA:   3'- -CCGUAGUCGC-CGg---GGUaUUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 78832 0.72 0.646485
Target:  5'- cGGCGcCGGCGGCCCgGgcucg-GCGCc -3'
miRNA:   3'- -CCGUaGUCGCCGGGgUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 122846 0.72 0.646485
Target:  5'- cGGCAUCgacGGCGGCgCCG--AGG-GCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGgGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 558 0.72 0.646485
Target:  5'- gGGCgGUgGGgGGCCCCG--GGGUcGCGCg -3'
miRNA:   3'- -CCG-UAgUCgCCGGGGUauUUCA-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 78000 0.72 0.656919
Target:  5'- cGGCGgaGGCGGCCCU--GGGG-GCGCc -3'
miRNA:   3'- -CCGUagUCGCCGGGGuaUUUCaCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.