miRNA display CGI


Results 41 - 60 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 28400 0.74 0.542838
Target:  5'- cGGCAcgccagauUCGGCGGCCgCCGcggcgGAAGcgGCGCc -3'
miRNA:   3'- -CCGU--------AGUCGCCGG-GGUa----UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 5835 0.74 0.542838
Target:  5'- aGGCGUCggcGGCGGCCUCGggGAAcaGCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGGGGUa-UUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 60254 0.74 0.553032
Target:  5'- cGGCGggAGCGGCggCCGUGAAGagGCGCc -3'
miRNA:   3'- -CCGUagUCGCCGg-GGUAUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 67854 0.74 0.563283
Target:  5'- cGUGUCGGCcacGGCgCCGUGGAG-GCGCg -3'
miRNA:   3'- cCGUAGUCG---CCGgGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 65546 0.74 0.563283
Target:  5'- gGGCAgCAGCgcgugccaGGCgUCCAUGAAGUGcCGCa -3'
miRNA:   3'- -CCGUaGUCG--------CCG-GGGUAUUUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 62309 0.74 0.573583
Target:  5'- gGGCGcgCGGCGGCCCCGc--GGUcccccaGCGCc -3'
miRNA:   3'- -CCGUa-GUCGCCGGGGUauuUCA------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 23145 0.74 0.573583
Target:  5'- cGCAUU--CGGCCCCAaAGAGUGgGCc -3'
miRNA:   3'- cCGUAGucGCCGGGGUaUUUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 127663 0.74 0.573583
Target:  5'- cGCAUU--CGGCCCCAaAGAGUGgGCc -3'
miRNA:   3'- cCGUAGucGCCGGGGUaUUUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 55226 0.74 0.573583
Target:  5'- cGGCGaCGGCGGCUC-----GGUGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 123902 0.74 0.573583
Target:  5'- aGGCcgCcgcugugggguGCGGCCCgAgcAGGUGCGCg -3'
miRNA:   3'- -CCGuaGu----------CGCCGGGgUauUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 117974 0.73 0.583927
Target:  5'- cGGCGguUCu-CGGCgCCCAUGGAGcGCGCg -3'
miRNA:   3'- -CCGU--AGucGCCG-GGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 78890 0.73 0.583927
Target:  5'- uGGCGaCGGCGGCgaCCCGgcGGGcGCGCa -3'
miRNA:   3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 106307 0.73 0.583927
Target:  5'- cGGCAgagccgcagCGGCGGCgCCCcgggGUAGAGccGCGCg -3'
miRNA:   3'- -CCGUa--------GUCGCCG-GGG----UAUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 1790 0.73 0.583927
Target:  5'- cGGCAgagccgcagCGGCGGCgCCCcgggGUAGAGccGCGCg -3'
miRNA:   3'- -CCGUa--------GUCGCCG-GGG----UAUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 135981 0.73 0.594308
Target:  5'- aGCGcCGGCGGCCUgaGUGGccgccGGUGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGGg-UAUU-----UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 46296 0.73 0.594308
Target:  5'- gGGCAaCGGCGcgccgcaguaGCCCCGcGAGGcUGCGCu -3'
miRNA:   3'- -CCGUaGUCGC----------CGGGGUaUUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 43500 0.73 0.594308
Target:  5'- cGGCGUCGGUGuccccGCCCCG-GAGGUagcgGCGCu -3'
miRNA:   3'- -CCGUAGUCGC-----CGGGGUaUUUCA----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 31464 0.73 0.594308
Target:  5'- aGCGcCGGCGGCCUgaGUGGccgccGGUGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGGg-UAUU-----UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 102584 0.73 0.594308
Target:  5'- cGCGUCGGCGGCCUCGccc---GCGCc -3'
miRNA:   3'- cCGUAGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 47230 0.73 0.594308
Target:  5'- gGGC-UCAGCuggGGCCCCAgAAAGccgaggaccUGCGCc -3'
miRNA:   3'- -CCGuAGUCG---CCGGGGUaUUUC---------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.